LOC111193041


Basic Information

Item Value
gene id LOC111193041
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7301826 ~ 7302308 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650220.1
CATAGCTCTCTCATTTCACATCGCGCTGTCTTTCAGCTCAAAAGAGTCGACAATGAATGAAGCTGTCAGAATTATCGTAAAGGATCTCAAAAATGTATCGCTAGAGTTGcgATCATCTCTACATCCAACACACTCTTTCAAACTGACATGTGATTGTGACCTGCTGGCGATGAAACATCTGAAACAAATACTGGACAACATGAATCCAAAGAATGTTTCTCCCAGTGATAAGGAACAATTGGGCAGAATTACGGAGAATTTAAAGGCTGTACTAAAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650220.1 True 279 lncRNA 0.41 3 7301826 7302308

Neighbor

gene id symbol gene type direction distance location
LOC103022894 drd1a,LOC108430983,LOC108274482,LOC107553333,LOC107677717,LOC107598377 coding downstream 35905 7260981 ~ 7265921 (-)
LOC103024994 stc2a,stc2,LOC108430941,LOC108274458,LOC107677705 coding downstream 294892 6985218 ~ 7006934 (-)
LOC103025318 LOC108430942 coding downstream 345633 6949576 ~ 6956193 (-)
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding downstream 433564 6864024 ~ 6868262 (-)
LOC103026932 NA coding downstream 708702 6585674 ~ 6593124 (-)
kif3a kif3a coding upstream 122375 7424683 ~ 7444873 (-)
LOC103030823 LOC108430979 coding upstream 144270 7446578 ~ 7486638 (-)
LOC111193047 LOC108430978 coding upstream 265092 7567400 ~ 7588582 (-)
LOC103026574 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 coding upstream 373979 7676287 ~ 7685366 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding upstream 387877 7690185 ~ 7696908 (-)
G71845 NA non-coding downstream 120374 7165132 ~ 7181452 (-)
G71839 NA non-coding downstream 125864 7130751 ~ 7175962 (-)
G71825 NA non-coding downstream 248507 7052898 ~ 7053319 (-)
G71822 NA non-coding downstream 318823 6982803 ~ 6983003 (-)
G71817 NA non-coding downstream 365746 6935798 ~ 6936080 (-)
G71900 NA non-coding upstream 40926 7343234 ~ 7343434 (-)
G71911 NA non-coding upstream 195473 7497781 ~ 7498483 (-)
G71914 NA non-coding upstream 219224 7521532 ~ 7521741 (-)
G71975 NA non-coding upstream 354354 7656662 ~ 7666552 (-)
G72022 NA non-coding upstream 576371 7878679 ~ 7879316 (-)
G71826 NA other downstream 244183 7057110 ~ 7057643 (-)
G71771 NA other downstream 477070 6777239 ~ 6824756 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 1460119 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 1825451 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 2377755 4924000 ~ 4924071 (-)
G71862 NA other upstream 7467 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 248877 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 471587 7773895 ~ 7842280 (-)
G72336 NA other upstream 1337230 8639538 ~ 8645601 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 1863570 9165878 ~ 9174309 (-)

Expression


Co-expression Network