LOC111193064


Basic Information

Item Value
gene id LOC111193064
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 283676 ~ 287042 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650221.1
ATGGTTTTGCACCCTGACTTTATGAGGTATGTTTATGAAAGCTGGCTGAACAAAGAGGGCACATATCCTTCCACTGGATTCTTAATGCTCGTGTTCTCGCTGCATGTCTGTGATCAGGTGAGCGTATTTGGATTTGGTGCCAAAGAAGATGGACGTTGGCATCATTACTACGACAAAAGATACGCTGTTTTCCAAAGTAAAGGAAATCACAGAGGAAGCCTGGAATACAACATCACTCAGAAACTCTATGAGAAAAAGTGGCTCCAATTTTATAAAGGAACTTAGAATAAATCCAGaGTTTGTAGCTTGAAAGACCTGGAAGACCAAAAAGTATTGTCTTGGCGAGAGATCAATCAGACACCAGCATATCACACTACTGTATGCATCTGGTATAATGGTGctcttgtgaaaaaaaaactttttttcacttCAGCAGATGGAGCCTCATACCTTCTTCAGAAACCCTGCGGAAGACTGGTTGAAGCTGTGCAAATTAGAGtcctatgaaaaaaaatgtttactggTTTTCTGGGTT

Function

GO:

id name namespace
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650221.1 True 535 lncRNA 0.40 3 283676 287042

Neighbor

gene id symbol gene type direction distance location
LOC103044579 NA coding downstream 87393 178319 ~ 196283 (-)
LOC111193040 NA coding upstream 644975 932017 ~ 938184 (-)
rps5 rps5 coding upstream 688053 975095 ~ 982603 (-)
LOC103041113 ppt2 coding upstream 701404 988446 ~ 1005877 (-)
LOC103026956 ctnna1 coding upstream 1711114 1998156 ~ 2220364 (-)
LOC103026657 tspan17,LOC108436843,LOC107749748,LOC107680656 coding upstream 2148638 2435680 ~ 2488996 (-)
G70253 NA non-coding downstream 100263 177044 ~ 183413 (-)
G70190 NA non-coding downstream 244645 37030 ~ 39031 (-)
G70299 NA non-coding upstream 104320 391362 ~ 391707 (-)
G70316 NA non-coding upstream 124543 411585 ~ 411826 (-)
G70317 NA non-coding upstream 133411 420453 ~ 420734 (-)
LOC111193066 NA non-coding upstream 149195 436237 ~ 445529 (-)
G70329 NA non-coding upstream 205359 492401 ~ 492603 (-)
LOC103042850 cratb,LOC108435838,LOC108274804,LOC107561339,LOC107758403,LOC105903715,LOC107563340,LOC107679039 other upstream 722844 1009886 ~ 1035016 (-)
tnip1 tnip1,LOC107594924,LOC107750363 other upstream 2417153 2704195 ~ 2745072 (-)
G70924 ndufb9 other upstream 2993114 3280156 ~ 3353599 (-)
LOC111193045 LOC108442482,LOC102793828 other upstream 3157053 3444095 ~ 3458810 (-)
LOC103023864 NA other upstream 3288519 3575561 ~ 3703751 (-)

Expression


Co-expression Network