LOC111193074


Basic Information

Item Value
gene id LOC111193074
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 3956444 ~ 3960203 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650226.1
ctgagagtgtgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGTGAAGAATGTTTAGGTGTAGAAGTGAAGA
>XR_002650227.1
tgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAAT
>XR_002650228.1
ctgagagtgtgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGTGAAGAATGTTTAGGTGTAGAAGTGAAGA
>XR_002650229.1
ctgagagtgtgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGTGAAGAATGTTTAGGTGTAGAAGTGAAGA
>XR_002650230.1
ctgagagtgtgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGTGAAGAATGTTTAGGTGTAGAAGTGAAGA
>XR_002650231.1
ctgagagtgtgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGTGAAGAATGTTTAGGTGTAGAAGTGAAGA
>XR_002650232.1
ctgagagtgtgtataatataaagtgtgtgtgtattgtgctgTGTATTGTTCACTGGTTCAGTTGTTCATCCATTAATTAGTCGAGTCAGAGCTGTGACTTTTTCTAATTGTACCATCTGGACCTGTGCTAAAAAACGCTCCAATCAGGGAAACTGATAAACGCTGAGAGGACTGATAAAACCTGACGCTTCTGCAAAGCTGTTCCCAGACTGATAATGATGTAGACCTTCTAACTTCTCACTTTACTCTCTGGAGTTTAGCCTTAAACTGTATGCTGGACCAAAATAACTAGTCCAAGACTCTGTTATATTTATGGCGTGATAGTGGAATTGTGGTGTGGATACTTACAGATTTAGTTCATTTCAGGTCATTATTAgggatttctattggtccattcatcaagaaattttagtgtaagggacagtttgtttaGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTAAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGCAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAACGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGGTGTAGAAGTGAAGAATGTTTAGTGAAGAATGTTTAGGTGTAGAAGTGAAGA

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650226.1 False 1106 lncRNA 0.37 3 3956444 3957741
XR_002650227.1 True 1246 lncRNA 0.36 4 3956453 3960203
XR_002650228.1 False 1083 lncRNA 0.37 3 3956444 3957741
XR_002650229.1 False 1106 lncRNA 0.37 4 3956444 3957741
XR_002650230.1 False 1060 lncRNA 0.37 3 3956444 3957741
XR_002650231.1 False 1083 lncRNA 0.37 3 3956444 3957741
XR_002650232.1 False 991 lncRNA 0.37 3 3956444 3957741

Neighbor

gene id symbol gene type direction distance location
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 21340 3923972 ~ 3935104 (+)
LOC103043978 NA coding upstream 517289 3420240 ~ 3439155 (+)
ndufb9 ndufb9 coding upstream 602849 3347768 ~ 3353595 (+)
LOC103046819 LOC108439802,LOC107669127,LOC107714775 coding upstream 842810 3095884 ~ 3113634 (+)
LOC103047122 LOC108439803 coding upstream 874505 3058524 ~ 3081939 (+)
LOC103045063 LOC108435620 coding downstream 171819 4132022 ~ 4215716 (+)
dpy19l4 dpy19l4 coding downstream 346462 4306665 ~ 4339082 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 897645 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 968974 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 983003 4943206 ~ 4954889 (+)
G71019 LOC108442489,LOC108274607,LOC105909062 non-coding upstream 67549 3884338 ~ 3888895 (+)
G71005 LOC108413582 non-coding upstream 111650 3842694 ~ 3844794 (+)
G70986 NA non-coding upstream 187722 3733622 ~ 3768722 (+)
G71048 NA non-coding downstream 34704 3994907 ~ 3995590 (+)
G71052 NA non-coding downstream 129885 4090088 ~ 4090634 (+)
G71073 NA non-coding downstream 191655 4151858 ~ 4154229 (+)
G71075 NA non-coding downstream 229422 4189625 ~ 4192656 (+)
G71103 NA non-coding downstream 330256 4290459 ~ 4290835 (+)
LOC111193071 NA other upstream 381686 3409670 ~ 3574758 (+)
G70846 NA other upstream 577834 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 663969 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1597215 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 1762885 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 396862 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 955610 4915813 ~ 4921820 (+)
G71247 NA other downstream 996095 4956298 ~ 4980011 (+)
G71249 NA other downstream 1003499 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1539705 5499908 ~ 5505638 (+)

Expression


Co-expression Network