LOC111193079


Basic Information

Item Value
gene id LOC111193079
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8784572 ~ 8793176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650234.1
CGTGGGAACTTTAACTTTGCATTTTGAGGCCCAGATGTGCTGCTGGTGCAATGAAACCTgacccccccaacacacactcaaacacacactcacacactctcacacacccatCCATGCTCCCCCAACCCTACCCACCCAGAGCTCTGCATTAAGACACATGTGGAAACAATTCACTCGATGCCCTGAGCAGGCAAGCCCTCAcactctctgacacacacacacacacacacatacatacacacacattcatgcaCATAACATATCCATAGTGCAGTCATTGCATATACATCACAAACCTGCCTGCACACACACGGCGCATGGGAGccacacacaggcacgtaggTAAACATACACCCCATACGCAAGCCGCTACGCTTCACTTCACGCCAATACATAAACACTCAGGCgcagaaacaagaaacacacacacacacacacacacacaccacatgctCATGTTCAACACACCATCGGACTCTGGtgaacactaacacactaaccacaACTTTACAATGAGATCAAATGAGAAAAGCATGTTAAGAACAATAGCTGGGTATTTatctccgttttttttttttttttcttcaggttgtgtgtgtgtgtgtgcgcgtgtgtgaaTGTTCAGAGGTTTGAGTCATCTCCCAGTAGACTGTGGTCCCTGATTGGACGCTATTTTTGTTGATGCCAGAGGTCAGAGGAGAATGGCCAGACTGCTTCGAGCTGATAGAATGACAACAGTAACGCAAATAACCACTCTTTACAACCTTGCAGAAAAGTATCTCTGAATGCACAACACGTCGAATTTTGAGGTGGATGGGCTTCAGCAGCAGAAGACCACACCGGGTGCCCTGACTCCTGTGAGCTAAGAATCggaaactgaggctacaattcGCACAGGCTCACCAAAATTGGACAATAAAAGCTTGGAAAAACATta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650234.1 True 937 lncRNA 0.47 2 8784572 8793176

Neighbor

gene id symbol gene type direction distance location
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding upstream 57937 8691950 ~ 8726635 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding upstream 97103 8674849 ~ 8687469 (+)
spock1 spock1,LOC107747099,LOC107655663 coding upstream 143224 8440137 ~ 8641348 (+)
mars2 mars2 coding upstream 1058759 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 1109909 7671558 ~ 7674663 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 16852 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 33338 8826514 ~ 8857516 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding downstream 68944 8862120 ~ 8868955 (+)
LOC111193085 NA coding downstream 79474 8872650 ~ 8873657 (+)
LOC111193083 NA coding downstream 88687 8881863 ~ 8884188 (+)
G72209 NA non-coding upstream 299809 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 346477 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 364267 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 383094 8401246 ~ 8401478 (+)
G72175 NA non-coding upstream 392095 8392261 ~ 8392477 (+)
G72278 NA non-coding downstream 296700 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 349186 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 434339 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 799131 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 804773 9597949 ~ 9651534 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1899031 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2245778 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2827553 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3105698 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 3278934 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 75952 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 349723 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1175330 9968506 ~ 9970042 (+)
G72621 NA other downstream 1285403 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1479743 10272919 ~ 10626964 (+)

Expression


Co-expression Network