LOC103036159


Basic Information

Item Value
gene id LOC103036159
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15085780 ~ 15111364 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650243.1
TTTAACAGGATCGAAAGAGTCCACCGGATGAGAGCGGAAGTGTTGGACAAGGGACGCCGCACGCGGACGCTGCTCAGGGCTCGCAAACACGCGAGTGAACGGAGTGGCTGCTGGTTCACTCACTGCCCGGGAAGGTGGATCGATCAGTGAAGCTATACTGACTGGGAGAACGGGGGAGTCGACTCGCCCTTCCACAAACTTAAGTATCCGGTGTGTAATCCAGTTCTGAACGAGTTGCTGTTTGTGGGAAGCGGAGCTGCTTTCTGTTTATGCGAGCGTGTCCCCCGTGTCTTGTCGCAGCGCGCTGGAAACCACGTGGCCCTGTAGCTGATGTGAGAACGTGAAAGACTCTATTGTGTTGGCGTTCTCTGCTCCTGAAAGGTGTGCTGAGGAAAAGGGTACCCCAGTCTCCCCTGCCCCGACAAACCTTGGTCTCAACCTAGACCTCCGTTGCCATTCCTTACAGGAACCAGCTACGAGGCCTTCTGAAAAACCACCGTGTTTCTTTCCCGATGATGAATGTGTGAGATCCGCAGGATGGAGGTATCAGCAGAGTGGCGCCACAGCGTGCTATCCTTCTGACGCCCATGGCTCTGTGTGATCTTCAGTCGAGACGGACGGCTCGGTGTCTGTACCTGCAAACACAACCAGCTAGCAGGAGTTTGGAGACACATCAACGTAATGCTCAGCATAATGTTTCCGACTGAAAAGACTCCGAGGGGTAGAATTTACTGGAGGAACGAACATAAACCATGACCTACCTTTATTTCCCAAAAGTCTGTTCTTCAAAGACGCCACAATGAATGTGAGCTGATAGATGTCTACCTCTCTTCATTGGGAATTTATGAGCCTGATGACATGAAGACTCTCATCCCCAGTGCAGCCGATGCCtggaaggaaaaagagagagtgaaagtaaaAGGATGCAAACCTGATGCTTCCAGGGCCGAGTTCTGGTGACCTGTCCAGCGGCAGAAGCCACGTCTGgcATGTCTGGTGGTTGCTGGAGGAGGTGAAGCCGGCCACAGGGGTGTAGACAGTGCAGTTCAGGAGGAATAAAAGGACAATAAGGAGCCAGAGAGGAAGTGGAGTGGAAGGGTTGGGTGCCAGACTGCTGATCCTGACAGCTGTAGGACCTCAGGCTCTCCTCAGCAGGAGCTTCACACAGACATGAGGCAGACATGAAGTGAGTCTGAAGAAGAGAAGTGGGTCCCACTCGAGCTCCTCAGGCAAAAGCAGCCTTTGAGGGTGCCACATGCCTGCTTTCCATCCAAGTTCACTGGGGTAGAGTACACAGGAGAAGCCGACGTATGCAGGGAGACGTGCGGGGAGAGGGAAGACCAGCCGGCGATTCATGTATTAAGTGAAGGAGTGTGAAATAAAGAGCATTGTTTATTATGCAATACAGTTCAGCAATTATGGTGATATAGTTTAGGTTACACCTATAAACAAATTGAATTCCTGTATGAGATTTACAgtaatcttactgtaaaaatACGGAAAGTGGGGAAAAATGcaattctgtttatttgtgcCTTTCCATTTCAGATGAGGAAATCCACTCACAAATCCACTACATTTGCTGTGCTCCTGCTTTGCTAGGCATTATTCAAGTGCCAAACAAAACATATTCATCATTGTCTTTTAATCACATCAAAAAGAAATATAGTGCCACCCCAGGGTGTTGGCAGGAATAGACAGTCCTCTGTGATGTTATGGTTTCCAGTGCTGCCAAACAATCCAGAAAATTGACttagaataaatgtatttttaatatgataaCTCAAGGCTGCCCCAGTGAATACAGAGGCGCTCTTTGTCAATTGTTTTTTTAGAGATCAGTGCAGCACATTAAAGATAGGGAGCACTGTATGATACACAGCGATTAAGCCTTCCTGCACTGCATCCTCCTCTAGCTCTAGATcctctgtgtttttatgtacattttctaCCCACCCTTGACCCTAACCTAGTGCATGAGATAAGTGATGATATGACATCACATTAGCATGCAAAACGGATGCTGTATCACTGCGCACAATATTGCCACATCTGAGAAATTTTTCATATATTCTCATGCAGTATATCCCAACAGCGTATTCCAATAACACAGTAACCGTAAAATTAGAGCTGGTGTCTCAACTGAGTAGTGGATGTTGGAATTGCATATTTTTTAAGCTTCAgcagaaaactaaataaaataaaacaaaacaagccaATAAATGACAGGCTGAGCTGCCAGCAGCACAATGAATAGACCTCTATTATTCTCCAGATACATCTTAGTTTACGTGTGTGAGCACCAAATTCCATGATGCTCTGCTGACAGATCTTCAGAACTAatgtatcattatttttttccacttgaATTGTGGAAACGTGACTGATTATGTAATTTCCTGCTTTGTTCCTACTATACCTGTTTGTTTAGTCcaaacattctttttttgttgttttcatttttttgcaaaaaaataaaaaataaataatagatctGGCACAAAAACACCATTAATAGACAGTTTTGAGATGGCAGCTTTAATTAGCCAATCACCCTCAGCTACAGCATTATCCCTGCACCACATTGCCTTATCCCAGCCTTAACATGAGCCATTTGGAGATGACCTTAACCAAGACAAGATGAGCAATATCGCCAAGCTTAAGTGATTTCTTATATATTCTCATATATTCCAACAAGTTTGAAACACAGTAAATGTGGAATTAGAGCTGATTGTCTGATTTGAGATATGGATGTTAATATTCTTAGACTTcagcaaaacaataaaataaaataaaacaaaacaaaagccaATAAATAACAAGCTGAGCTGAAGCACAACAATTAGGCCTCTGTTAGTCTCTAAATACATCTTAGTGTACATAGTGACACAGCATCCGATTCAATCTATCAGTTTTTCTACTCGAACTGTGGAAATTAGCTAGATTAGATTAGTTCCTGCTTCCTTTCCTATTGTATCTGTTAATTTAGTCCTTATGTCCTtttttgtatatacagctctggaaaaaaatagagaccacttaaatatgatgagtttctttgtttttttcctaatt
>XR_002650244.1
TTTAACAGGATCGAAAGAGTCCACCGGATGAGAGCGGAAGTGTTGGACAAGGGACGCCGCACGCGGACGCTGCTCAGGGCTCGCAAACACGCGAGTGAACGGAGTGGCTGCTGGTTCACTCACTGCCCGGGAAGGTGGATCGATCAGTGAAGCTATACTGACTGGGAGAACGGGGGAGTCGACTCGCCCTTCCACAAACTTAAGTATCCGGTGTGTAATCCAGTTCTGAACGAGTTGCTGTTTGTGGGAAGCGGAGCTGCTTTCTGTTTATGCGAGCGTGTCCCCCGTGTCTTGTCGCAGCGCGCTGGAAACCACGTGGCCCTGTAGCTGATGTGAGAACGTGAAAGACTCTATTGTGTTGGCGTTCTCTGCTCCTGAAAGGTGTGCTGAGGAAAAGGGTACCCCAGTCTCCCCTGCCCCGACAAACCTTGGTCTCAACCTAGACCTCCGTTGCCATTCCTTACAGGAACCAGCTACGAGGCCTTCTGAAAAACCACCGTGTTTCTTTCCCGATGATGAATGTGTGAGATCCGCAGGATGGAGGTATCAGCAGAGTGGCGCCACAGCGTGCTATCCTTCTGACGCCCATGGCTCTGTGTGATCTTCAGTCGAGACGGACGGCTCGGTGTCTGTACCTGCAAACACAACCAGCTAGCAGGAGTTTGGAGACACATCAACGTAATGCTCAGCATAATGTTTCCGACTGAAAAGACTCCGAGGGGTAGAATTTACTGGAGGAACGAACATAAACCATGACCTACCTTTATTTCCCAAAAGTCTGTTCTTCAAAGACGCCACAATGAATGTGAGCTGATAGATGTCTACCTCTCTTCATTGGGAATTTATGAGCCTGATGACATGAAGACTCTCATCCCCAGTGCAGGGCCGAGTTCTGGTGACCTGTCCAGCGGCAGAAGCCACGTCTGgcATGTCTGGTGGTTGCTGGAGGAGGTGAAGCCGGCCACAGGGGTGTAGACAGTGCAGTTCAGGAGGAATAAAAGGACAATAAGGAGCCAGAGAGGAAGTGGAGTGGAAGGGTTGGGTGCCAGACTGCTGATCCTGACAGCTGTAGGACCTCAGGCTCTCCTCAGCAGGAGCTTCACACAGACATGAGGCAGACATGAAGTGAGTCTGAAGAAGAGAAGTGGGTCCCACTCGAGCTCCTCAGGCAAAAGCAGCCTTTGAGGGTGCCACATGCCTGCTTTCCATCCAAGTTCACTGGGGTAGAGTACACAGGAGAAGCCGACGTATGCAGGGAGACGTGCGGGGAGAGGGAAGACCAGCCGGCGATTCATGTATTAAGTGAAGGAGTGTGAAATAAAGAGCATTGTTTATTATGCAATACAGTTCAGCAATTATGGTGATATAGTTTAGGTTACACCTATAAACAAATTGAATTCCTGTATGAGATTTACAgtaatcttactgtaaaaatACGGAAAGTGGGGAAAAATGcaattctgtttatttgtgcCTTTCCATTTCAGATGAGGAAATCCACTCACAAATCCACTACATTTGCTGTGCTCCTGCTTTGCTAGGCATTATTCAAGTGCCAAACAAAACATATTCATCATTGTCTTTTAATCACATCAAAAAGAAATATAGTGCCACCCCAGGGTGTTGGCAGGAATAGACAGTCCTCTGTGATGTTATGGTTTCCAGTGCTGCCAAACAATCCAGAAAATTGACttagaataaatgtatttttaatatgataaCTCAAGGCTGCCCCAGTGAATACAGAGGCGCTCTTTGTCAATTGTTTTTTTAGAGATCAGTGCAGCACATTAAAGATAGGGAGCACTGTATGATACACAGCGATTAAGCCTTCCTGCACTGCATCCTCCTCTAGCTCTAGATcctctgtgtttttatgtacattttctaCCCACCCTTGACCCTAACCTAGTGCATGAGATAAGTGATGATATGACATCACATTAGCATGCAAAACGGATGCTGTATCACTGCGCACAATATTGCCACATCTGAGAAATTTTTCATATATTCTCATGCAGTATATCCCAACAGCGTATTCCAATAACACAGTAACCGTAAAATTAGAGCTGGTGTCTCAACTGAGTAGTGGATGTTGGAATTGCATATTTTTTAAGCTTCAgcagaaaactaaataaaataaaacaaaacaagccaATAAATGACAGGCTGAGCTGCCAGCAGCACAATGAATAGACCTCTATTATTCTCCAGATACATCTTAGTTTACGTGTGTGAGCACCAAATTCCATGATGCTCTGCTGACAGATCTTCAGAACTAatgtatcattatttttttccacttgaATTGTGGAAACGTGACTGATTATGTAATTTCCTGCTTTGTTCCTACTATACCTGTTTGTTTAGTCcaaacattctttttttgttgttttcatttttttgcaaaaaaataaaaaataaataatagatctGGCACAAAAACACCATTAATAGACAGTTTTGAGATGGCAGCTTTAATTAGCCAATCACCCTCAGCTACAGCATTATCCCTGCACCACATTGCCTTATCCCAGCCTTAACATGAGCCATTTGGAGATGACCTTAACCAAGACAAGATGAGCAATATCGCCAAGCTTAAGTGATTTCTTATATATTCTCATATATTCCAACAAGTTTGAAACACAGTAAATGTGGAATTAGAGCTGATTGTCTGATTTGAGATATGGATGTTAATATTCTTAGACTTcagcaaaacaataaaataaaataaaacaaaacaaaagccaATAAATAACAAGCTGAGCTGAAGCACAACAATTAGGCCTCTGTTAGTCTCTAAATACATCTTAGTGTACATAGTGACACAGCATCCGATTCAATCTATCAGTTTTTCTACTCGAACTGTGGAAATTAGCTAGATTAGATTAGTTCCTGCTTCCTTTCCTATTGTATCTGTTAATTTAGTCCTTATGTCCTtttttgtatatacagctctggaaaaaaatagagaccacttaaatatgatgagtttctttgtttttttcctaatt
>XR_002650245.1
TTTAACAGGATCGAAAGAGTCCACCGGATGAGAGCGGAAGTGTTGGACAAGGGACGCCGCACGCGGACGCTGCTCAGGGCTCGCAAACACGCGAGTGAACGGAGTGGCTGCTGGTTCACTCACTGCCCGGGAAGGTGGATCGATCAGTGAAGCTATACTGACTGGGAGAACGGGGGAGTCGACTCGCCCTTCCACAAACTTAAGTATCCGGTGTGTAATCCAGTTCTGAACGAGTTGCTGTTTGTGGGAAGCGGAGCTGCTTTCTGTTTATGCGAGCGTGTCCCCCGTGTCTTGTCGCAGCGCGCTGGAAACCACGTGGCCCTGTAGCTGATGTGAGAACGTGAAAGACTCTATTGTGTTGGCGTTCTCTGCTCCTGAAAGGTGTGCTGAGGAAAAGGGTACCCCAGTCTCCCCTGCCCCGACAAACCTTGGTCTCAACCTAGACCTCCGTTGCCATTCCTTACAGGAACCAGgcATGTCTGGTGGTTGCTGGAGGAGGTGAAGCCGGCCACAGGGGTGTAGACAGTGCAGTTCAGGAGGAATAAAAGGACAATAAGGAGCCAGAGAGGAAGTGGAGTGGAAGGGTTGGGTGCCAGACTGCTGATCCTGACAGCTGTAGGACCTCAGGCTCTCCTCAGCAGGAGCTTCACACAGACATGAGGCAGACATGAAGTGAGTCTGAAGAAGAGAAGTGGGTCCCACTCGAGCTCCTCAGGCAAAAGCAGCCTTTGAGGGTGCCACATGCCTGCTTTCCATCCAAGTTCACTGGGGTAGAGTACACAGGAGAAGCCGACGTATGCAGGGAGACGTGCGGGGAGAGGGAAGACCAGCCGGCGATTCATGTATTAAGTGAAGGAGTGTGAAATAAAGAGCATTGTTTATTATGCAATACAGTTCAGCAATTATGGTGATATAGTTTAGGTTACACCTATAAACAAATTGAATTCCTGTATGAGATTTACAgtaatcttactgtaaaaatACGGAAAGTGGGGAAAAATGcaattctgtttatttgtgcCTTTCCATTTCAGATGAGGAAATCCACTCACAAATCCACTACATTTGCTGTGCTCCTGCTTTGCTAGGCATTATTCAAGTGCCAAACAAAACATATTCATCATTGTCTTTTAATCACATCAAAAAGAAATATAGTGCCACCCCAGGGTGTTGGCAGGAATAGACAGTCCTCTGTGATGTTATGGTTTCCAGTGCTGCCAAACAATCCAGAAAATTGACttagaataaatgtatttttaatatgataaCTCAAGGCTGCCCCAGTGAATACAGAGGCGCTCTTTGTCAATTGTTTTTTTAGAGATCAGTGCAGCACATTAAAGATAGGGAGCACTGTATGATACACAGCGATTAAGCCTTCCTGCACTGCATCCTCCTCTAGCTCTAGATcctctgtgtttttatgtacattttctaCCCACCCTTGACCCTAACCTAGTGCATGAGATAAGTGATGATATGACATCACATTAGCATGCAAAACGGATGCTGTATCACTGCGCACAATATTGCCACATCTGAGAAATTTTTCATATATTCTCATGCAGTATATCCCAACAGCGTATTCCAATAACACAGTAACCGTAAAATTAGAGCTGGTGTCTCAACTGAGTAGTGGATGTTGGAATTGCATATTTTTTAAGCTTCAgcagaaaactaaataaaataaaacaaaacaagccaATAAATGACAGGCTGAGCTGCCAGCAGCACAATGAATAGACCTCTATTATTCTCCAGATACATCTTAGTTTACGTGTGTGAGCACCAAATTCCATGATGCTCTGCTGACAGATCTTCAGAACTAatgtatcattatttttttccacttgaATTGTGGAAACGTGACTGATTATGTAATTTCCTGCTTTGTTCCTACTATACCTGTTTGTTTAGTCcaaacattctttttttgttgttttcatttttttgcaaaaaaataaaaaataaataatagatctGGCACAAAAACACCATTAATAGACAGTTTTGAGATGGCAGCTTTAATTAGCCAATCACCCTCAGCTACAGCATTATCCCTGCACCACATTGCCTTATCCCAGCCTTAACATGAGCCATTTGGAGATGACCTTAACCAAGACAAGATGAGCAATATCGCCAAGCTTAAGTGATTTCTTATATATTCTCATATATTCCAACAAGTTTGAAACACAGTAAATGTGGAATTAGAGCTGATTGTCTGATTTGAGATATGGATGTTAATATTCTTAGACTTcagcaaaacaataaaataaaataaaacaaaacaaaagccaATAAATAACAAGCTGAGCTGAAGCACAACAATTAGGCCTCTGTTAGTCTCTAAATACATCTTAGTGTACATAGTGACACAGCATCCGATTCAATCTATCAGTTTTTCTACTCGAACTGTGGAAATTAGCTAGATTAGATTAGTTCCTGCTTCCTTTCCTATTGTATCTGTTAATTTAGTCCTTATGTCCTtttttgtatatacagctctggaaaaaaatagagaccacttaaatatgatgagtttctttgtttttttcctaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650243.1 True 3075 lncRNA 0.43 9 15085780 15111364
XR_002650244.1 False 3014 lncRNA 0.43 9 15085780 15111364
XR_002650245.1 False 2561 lncRNA 0.42 6 15085780 15111364

Neighbor

gene id symbol gene type direction distance location
LOC103035545 LOC108428749,LOC105908727 coding downstream 11011 15001175 ~ 15074769 (-)
irx3 LOC103035229,LOC108428748 coding downstream 118479 14964498 ~ 14967301 (-)
rbl2 rbl2 coding downstream 196025 14868932 ~ 14889755 (-)
LOC103033621 NA coding downstream 228184 14849582 ~ 14857596 (-)
snx20 snx20 coding downstream 254303 14827404 ~ 14831477 (-)
LOC103038669 kif21a coding upstream 116675 15228039 ~ 15290712 (-)
fibin LOC108442682 coding upstream 320109 15431473 ~ 15434025 (-)
ano3 ano3,LOC107677449 coding upstream 349323 15460687 ~ 15543780 (-)
LOC103042382 LOC108442690 coding upstream 452607 15563971 ~ 15571540 (-)
gas2 gas2,LOC107677431,LOC107728426 coding upstream 469672 15581036 ~ 15621857 (-)
G73697 NA non-coding downstream 56 15085494 ~ 15085724 (-)
G73694 NA non-coding downstream 4481 15081057 ~ 15081299 (-)
G73679 rpgrip1l non-coding downstream 175100 14909107 ~ 14910680 (-)
G73675 NA non-coding downstream 180960 14902388 ~ 14904820 (-)
G73674 NA non-coding downstream 183487 14900668 ~ 14902293 (-)
G73760 NA non-coding upstream 77230 15188594 ~ 15189335 (-)
LOC111193098 NA non-coding upstream 203273 15314637 ~ 15318087 (-)
G73862 NA non-coding upstream 318783 15430147 ~ 15431307 (-)
G73870 NA non-coding upstream 337310 15448674 ~ 15528462 (-)
G73869 NA non-coding upstream 338140 15449504 ~ 15454610 (-)
hbp1 hbp1,LOC107732286,LOC107701066 other downstream 288497 14709058 ~ 14797283 (-)
LOC103025073 dynlrb2,LOC103025073,LOC106573385 other downstream 540244 14542196 ~ 14545536 (-)
G73172 NA other downstream 2464424 12610834 ~ 12621356 (-)
fbxo31 fbxo31,LOC107675295,LOC107751272,LOC107742043,LOC107662464 other downstream 2520802 12548690 ~ 12564978 (-)
LOC111193053 tnni2a.2,LOC108428758,LOC108275295,LOC103035007,LOC107549280,LOC107595232 other downstream 3034291 12048626 ~ 12051489 (-)
LOC103037068 cpne8,LOC108274474,LOC107679956,LOC107752477,LOC107723993,LOC105026415,LOC106561599,LOC105028206 other upstream 12450 15123814 ~ 15214284 (-)
LOC103040324 NA other upstream 269965 15381329 ~ 15414613 (-)
LOC103046265 pkp3 other upstream 646939 15758303 ~ 15780678 (-)
LOC103041134 rps27l,zgc:136826,LOC107752326,LOC107598918,LOC101156845 other upstream 1355725 16467089 ~ 16470323 (-)
nrg4 NA other upstream 2765662 17877026 ~ 17885395 (-)

Expression


Co-expression Network