LOC111193100


Basic Information

Item Value
gene id LOC111193100
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16556002 ~ 16561788 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650252.1
CACAGTCTGAACTTGTTTGTGTTCCTTATTGTGACACACTCTGACCTGGCTTCATTCGAATGTGAGGTGCTTACTTGGAACACCAGCTACAGAGGTCAAGCTCTGATAAGGAACAAAAAACATGGCAATAAAGGAAAAACAATGATATGCAAAGGTGTGACCAGGCGCACCAGGTAAGATGGTTCATGCATATGTTGTGGTATTGGCATCTGAAACAGATGAGCATGGATCATTTGCCAAGATGATGTGCTGGCACAGCCTTTAGCCAAGTGAGATGTTTGTACTGGAGGGCATCAGACACAACATTGCAGAACACTGTGATCCTCTCCAGCCATCAAAGTTAGGAATCCAGCCAAGGCCATGCAGGGAAAATGTGAGCCTGTGGAAGGAATGTCCAGTAATGGAGGCATGCTGATTACAGATCCTGTGAATGGCATCACAAATGGCAGAAGCACTGAGGAGATGGTGGAGATCAAAAAGACAAAGACTCACAGAtaagacaagagagagagcgcgagagagagagcgagaaagcaAAATAGTGCATGCCACCTACTACGAGGACACTCCCCTTTCTGAACCCTGagagacagatacatcCTTGCACCAGTAAAGATCTCCAGAACCAGGCCTTAATGTTCTAGGACAGCACAGCCTTGAATGGACAGTTCTACGAAGTGGTGAACACAGTCaggctctgcaaaaaaaaaaaagaagaaatgcaTTCCTCTTGCTAACATCACAGCAAGCCAGTCAGGACAGCTCCTCACTGAGATCATTGCAAAAAGTTAAACTGATGATACATAAACGAATCATATTTCTGGCAAGGCTTTGGAAATTCACCTCTGAATCAAGTAAAAGAACCGATGTTATGAGTTCATGATGAAAATGCTCATAGTAAAGTGAGTCATTTCACAGGAGTGATCAAAGAGTGGGAGAGATTCTACCACCCATGTAAATCGTTTTTTGGATATTACCGTTTCACTGGCAGCTCAGATCATAAGTAAAAGGGCAGAGAGTGGGTTTTTCACTGTGTGGGTTGGAGTGAGAGTTATTCAGAATTGTTTCACAGATTGCACAATGTTCAGTGCTTTCTGATGAAGAGTAAATGATTATCATGTTACCTTGACATGGGTTGCTGTCATAGGGTATGCTGGCTGTGCAGTAACACAGTGGCTGGGGTTTTTGGAGACAGGTGGACAGGTACACATTTTGCGTCATGTGCATGCATGGTGGTTGGTGTGgggcagtggataacaccactacctgctagtgagctaccacaccatgtgggagactaggTTTCAATTCCTGGGTAtttatgctgtgctacaccaataagagtccttggggcAGATTCTTAATGTTACATTGACgcacctctgtaatagaaataaccttgtaagtcactctggataagagcatcagctaaataccgtaaatgtaaaatgtaaaaacatgccTGGACAAATCTGGATGTAATTGTAAATCTATAATTCAATACAAATTCCTGTGGAACTGTGGagagaaaataagtatttggctATGGTACGCTATATTTAGAAGCATTATCAAAAATGTGCAACTTTCTTGTCACGTTTTTCTCATGCCTGTCACCCTGCTGAAGACAGAGGGATGGGCATATTTCTTCCTTTTGTGGCAGCCATCTTGTGAAAGAGGAACTGCCCCCTTGTTGTTGTGCCTGTCATGGAGTGTGCCTCCGAAGCACCACATGAAACGCAAGAACACCCAGTCCTTGTGGTGAAAGAATATGTAAAGTAATACAGCCAGATGGCCCTCTGAATGCAGTTCAGCCTTGTTCTCACTGAGCACCAGGAACTTTCCAGAGAAGCCTTTTGTGAGCAGCACTGAAAGACTAGACACTTTCCCACAGGAGAGGAAGCACGTTGCTGGTGTTAAAAGGTGCACTCCTGTCATTGTTCTACTCTTATTATTGTGTCACCCTCAAAAAGGTTTAATTTTAGAGTTGGGCTCAATGACCCCAGAGTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650252.1 True 2012 lncRNA 0.44 3 16556002 16561788

Neighbor

gene id symbol gene type direction distance location
LOC103041748 rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107659505,LOC107752325 coding upstream 67713 16474883 ~ 16488289 (+)
dnaja4 dnaja4,LOC107698158,LOC107550212,LOC107752324,LOC107598844,LOC107659503,LOC107715738,LOC107099226 coding upstream 89145 16461892 ~ 16466857 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding upstream 109216 16430168 ~ 16446786 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843,LOC107757768 coding upstream 127547 16415691 ~ 16428455 (+)
sh2d7 LOC103027007 coding upstream 186632 16359929 ~ 16369370 (+)
LOC103042878 znf467,LOC108274922 coding downstream 2185 16563973 ~ 16591763 (+)
LOC103024840 LOC108433634,LOC108274563 coding downstream 186502 16748290 ~ 16794972 (+)
gcnt3 NA coding downstream 235155 16796943 ~ 16798620 (+)
foxb1 foxb1 coding downstream 333527 16895315 ~ 16897931 (+)
LOC103025470 tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 1122882 17684670 ~ 17806900 (+)
G74247 NA non-coding upstream 33317 16522267 ~ 16522685 (+)
G74241 LOC108433637,LOC108274564,LOC107698134,LOC107715707 non-coding upstream 56664 16497035 ~ 16499338 (+)
G74189 rps27l,zgc:136826,LOC107752326,LOC107598918 non-coding upstream 85635 16467623 ~ 16470367 (+)
G74195 NA non-coding upstream 98174 16457295 ~ 16457828 (+)
G74194 NA non-coding upstream 100451 16454984 ~ 16455551 (+)
G74294 NA non-coding downstream 184071 16745859 ~ 16746395 (+)
LOC111193101 NA non-coding downstream 269321 16831109 ~ 16887148 (+)
G74339 anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175,LOC107659511,LOC107550215,LOC107598852 non-coding downstream 395869 16957657 ~ 16964382 (+)
G74335 rora,LOC108433630,LOC106561150,LOC107659510,LOC107598851 non-coding downstream 427240 16989028 ~ 17008539 (+)
G74413 NA non-coding downstream 914969 17476757 ~ 17476980 (+)
G74169 NA other upstream 267673 16286676 ~ 16288329 (+)
svip svip other upstream 978469 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 1634999 14891534 ~ 14921003 (+)
G73533 NA other upstream 1906451 14648829 ~ 14649551 (+)
LOC103043719 NA other upstream 3658071 12871484 ~ 12897931 (+)
G74649 NA other downstream 1893063 18454851 ~ 18455197 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other downstream 1908916 18470704 ~ 18479345 (+)
G74832 NA other downstream 2521028 19082816 ~ 19085556 (+)
cadps2 NA other downstream 2578361 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 2898170 19459958 ~ 19462187 (+)

Expression


Co-expression Network