LOC111193102


Basic Information

Item Value
gene id LOC111193102
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18702721 ~ 18703887 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650255.1
gatgagcaatcgattcagtcttcaatcgagccaacaaccagccaatcacatcacgctccgaagatcacgtgacaggtaGCGCCTCACGGCTCAGAGCCGCTCAACGCGAGTCACAGCCCCCTCCGCTGCTCCTCTCGAGTaggttgaaaagaagatggagaagtTTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650255.1 True 384 lncRNA 0.43 2 18702721 18703887

Neighbor

gene id symbol gene type direction distance location
LOC103032349 znf800 coding upstream 34261 18653276 ~ 18668460 (+)
LOC103032021 NA coding upstream 58642 18637244 ~ 18644079 (+)
LOC103027288 NA coding upstream 67774 18632303 ~ 18634947 (+)
LOC103026996 lamb1,lamb1a,LOC107662456,LOC107595246 coding upstream 87600 18577789 ~ 18615121 (+)
LOC103026700 lamb4 coding upstream 127354 18535874 ~ 18575367 (+)
pot1 NA coding downstream 189340 18893227 ~ 18937127 (+)
gpr37 gpr37,gpr37a,LOC107753714,LOC107698235,LOC106584563 coding downstream 235208 18939095 ~ 18950348 (+)
LOC103034777 wasl,wasla,LOC108275301,LOC107598884,LOC107659464 coding downstream 352900 19056787 ~ 19081399 (+)
iqub iqub coding downstream 394629 19098516 ~ 19114949 (+)
slc13a1 slc13a1 coding downstream 415660 19119547 ~ 19133880 (+)
G74714 NA non-coding upstream 74693 18627649 ~ 18628028 (+)
G74672 NA non-coding upstream 76311 18625071 ~ 18626410 (+)
G74668 NA non-coding upstream 168591 18533808 ~ 18534130 (+)
G74654 NA non-coding upstream 240085 18461444 ~ 18462636 (+)
G74535 LOC108436883 non-coding upstream 327182 18371716 ~ 18375539 (+)
G74770 NA non-coding downstream 253751 18957638 ~ 18970866 (+)
G74810 NA non-coding downstream 288791 18992678 ~ 18994863 (+)
G74831 NA non-coding downstream 378425 19082312 ~ 19082521 (+)
G74833 NA non-coding downstream 381916 19085803 ~ 19086231 (+)
G74951 fnbp4,LOC107598873,LOC107681673 non-coding downstream 774111 19477998 ~ 19481987 (+)
LOC103029914 scamp5,scamp5a,LOC108436905,LOC103363822,LOC107395508,LOC107703195 other upstream 223376 18470704 ~ 18479345 (+)
G74649 NA other upstream 247524 18454851 ~ 18455197 (+)
G74169 NA other upstream 2414392 16286676 ~ 16288329 (+)
svip svip other upstream 3125188 15572302 ~ 15577533 (+)
rpgrip1l rpgrip1l other upstream 3781718 14891534 ~ 14921003 (+)
G74832 NA other downstream 378929 19082816 ~ 19085556 (+)
cadps2 NA other downstream 436262 19140149 ~ 19322775 (+)
tmem17 tmem17,znf774,LOC107678976,LOC107753710 other downstream 756071 19459958 ~ 19462187 (+)
LOC103044129 NA other downstream 823325 19527212 ~ 19537617 (+)
LOC103028745 NA other downstream 1499732 20203619 ~ 20207955 (+)

Expression


Co-expression Network