LOC111193107


Basic Information

Item Value
gene id LOC111193107
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 21721645 ~ 21724907 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650261.1
TGAGTTTTCTGACAGAGAACATCAAAGTGTGTTGTGCTAACCGCCTGATCCTGAACATGCAGGTAGAGCCTTCTGCTCAGTCCCAACATGATAGCATTCCTCTCCTCCTCAAGCAGAGGCAAGACCCAGACACGGGCAAACCCGACGCTGGTGAGGTGTGGGGGTGGGGGCAAGCCCCTCCTCACCGCTTTAACAGAATGAAAAAggagaagaggaaaaagagagagagggaaaaaaggcAGAAATCACAGCCGAACGGAGCAGTGAGGGAACAGTATCCGATTGTGTGATGGGAAAAGGACAGGGAGAGGACGGGCGCAGGGCAGTGAGCTTTCCTCATTCACTCGTCAAACTCATCTGCTGCACACAAGGTAATCAGAGCTGATAGAGGAGGGAGCTGGCACAGACTGCGGGAGCAGAGGATGTCTTCACCTCCACAGGCGGAAAAGAGAGAatactatgaagaaaaaacagcacTGCACGACCTGCTGTCTATACTAAAGGAGGAACAAAACCTCAGGCTAAATTAGGAGCAGACTACATGGCAGCAGCTGGTAAGATTGGTGCATTTGTGGAGCAGGGTGTCAATGACAGCCTCAAAGATCACACGCCTCATAAACAGACACACTGATCAAATCAGCACATGTGGCTTTATTCTTGTGTATATGTAAAAGATCCAATGAACAACTTGATTCTCTCAGTATGCTGTATGTCGTGTTGTGTGTGTCTCATGTGATTAAAGAAATACAACTGACAAGTCTAAACATAACTGTGAATGGCatggaatgtgtttttaaagatgTCAAAATGGTTACTGac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650261.1 True 819 lncRNA 0.47 2 21721645 21724907

Neighbor

gene id symbol gene type direction distance location
irak4 irak4 coding downstream 130391 21578912 ~ 21591254 (-)
tmem117 tmem117 coding downstream 162153 21475745 ~ 21559492 (-)
LOC103045028 NA coding downstream 421963 21293359 ~ 21299682 (-)
pclaf kiaa0101 coding downstream 483451 21236632 ~ 21238194 (-)
LOC103043194 csnk1g1,LOC108415052,LOC108274686,LOC106573333,LOC107738908,LOC107559435 coding downstream 486527 21199250 ~ 21235118 (-)
LOC103022647 NA coding upstream 187617 21912524 ~ 21946943 (-)
pdzrn4 pdzrn4 coding upstream 326331 22051238 ~ 22145393 (-)
cntn1 cntn1,LOC108275444 coding upstream 565166 22290073 ~ 22421277 (-)
LOC103026605 NA coding upstream 866713 22591620 ~ 22627981 (-)
LOC103026897 LOC103026897,LOC108428397 coding upstream 905280 22630187 ~ 22637125 (-)
G75554 NA non-coding downstream 95363 21626069 ~ 21626282 (-)
G75550 NA non-coding downstream 136994 21583365 ~ 21584651 (-)
G75542 twf1,LOC108428409 non-coding downstream 145990 21566322 ~ 21575655 (-)
G75451 NA non-coding downstream 476115 21245264 ~ 21245530 (-)
G75447 NA non-coding downstream 533900 21184875 ~ 21187745 (-)
G75584 NA non-coding upstream 85633 21810540 ~ 21810761 (-)
G75611 NA non-coding upstream 216663 21941570 ~ 22001415 (-)
G75618 NA non-coding upstream 243798 21968705 ~ 21971088 (-)
LOC111193108 NA non-coding upstream 276583 22001490 ~ 22002284 (-)
G75623 NA non-coding upstream 280522 22005429 ~ 22007415 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 448628 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 650399 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 973437 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1621395 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1689618 20027162 ~ 20032027 (-)
LOC103024007 LOC108428399 other upstream 717829 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 1599670 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 2102307 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 2515991 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 3066285 24791192 ~ 24798616 (-)

Expression


Co-expression Network