LOC111193108


Basic Information

Item Value
gene id LOC111193108
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22001490 ~ 22002284 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650262.1
TAGGTAGAGgggaggacttttattttgatagcTACTGATTGGCAGAACAGGATTCTGCGCTGCTTATAGTCTCGCGGGACCAGCACGAAGTAGCGTTTGGTCTCGTGGCGGCAGGTACAAGCTCCGGTCGGAAAGCTCCAGCTCGTGGGAAAGCTGCTTTAAAAGAACTCTGTGGGAGATAGTTTTATTGTGCTTACTGACTGGAAAGGATTAaaggaacacctggagggtGTATCAAGGGGCACTGTGTGCGTGAGAGGAATCCATAGTTGAAGCAGTGAATGTGGGAGCTCCAGGAATCAGCTGGGGGGGTGTAGCTGCTGAGTGCGTTTGTATTGATGCTGAAGGTGCTGTGAAGGCGATTGAGTTCTGGCTTCCGCATTTACGACTGATTGGTATGTATTATCTGACTGGATACTTTATTTATGCAGTAAAAAGTAACTAATACAGTCAATGAGTGGAGTGGCtaacttttatttatgttttaggaGTGACCGAAAAAGGCCAATGATAGTAGccactgtttttctctcaaaATCTTCTCTTACATCTTCTCCCGGGTTTTAGGATTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650262.1 True 574 lncRNA 0.45 3 22001490 22002284

Neighbor

gene id symbol gene type direction distance location
LOC103022647 NA coding downstream 54547 21912524 ~ 21946943 (-)
irak4 irak4 coding downstream 410236 21578912 ~ 21591254 (-)
tmem117 tmem117 coding downstream 441998 21475745 ~ 21559492 (-)
LOC103045028 NA coding downstream 701808 21293359 ~ 21299682 (-)
pclaf kiaa0101 coding downstream 763296 21236632 ~ 21238194 (-)
pdzrn4 pdzrn4 coding upstream 48954 22051238 ~ 22145393 (-)
cntn1 cntn1,LOC108275444 coding upstream 287789 22290073 ~ 22421277 (-)
LOC103026605 NA coding upstream 589336 22591620 ~ 22627981 (-)
LOC103026897 LOC103026897,LOC108428397 coding upstream 627903 22630187 ~ 22637125 (-)
LOC103027474 NA coding upstream 664539 22666823 ~ 22687469 (-)
G75611 NA non-coding downstream 75 21941570 ~ 22001415 (-)
G75618 NA non-coding downstream 30402 21968705 ~ 21971088 (-)
G75584 NA non-coding downstream 190729 21810540 ~ 21810761 (-)
LOC111193107 NA non-coding downstream 276583 21721645 ~ 21724907 (-)
G75554 NA non-coding downstream 375208 21626069 ~ 21626282 (-)
G75623 NA non-coding upstream 3145 22005429 ~ 22007415 (-)
G75686 NA non-coding upstream 583642 22585926 ~ 22617027 (-)
G75771 LOC106676625,LOC107104322 non-coding upstream 737220 22739504 ~ 22739793 (-)
G75774 NA non-coding upstream 749036 22751320 ~ 22751545 (-)
G75777 NA non-coding upstream 762641 22764925 ~ 22824298 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 728473 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 930244 21065319 ~ 21071246 (-)
LOC103032014 maf,LOC108428434,LOC108274756,LOC102790406,LOC102298902,LOC101477682,LOC102192535,LOC101173775,LOC100702616,LOC107663990,LOC107565340 other downstream 1253282 20622641 ~ 20748208 (-)
hsd17b12 hsd17b12,hsd17b12a,LOC107661451,LOC107696265,LOC107573907,LOC107716735,LOC107753600 other downstream 1901240 20084428 ~ 20100250 (-)
G75207 api5,LOC107696269,LOC107753602 other downstream 1969463 20027162 ~ 20032027 (-)
LOC103024007 LOC108428399 other upstream 440452 22442736 ~ 22574013 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other upstream 1322293 23324577 ~ 23366216 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other upstream 1824930 23827214 ~ 23833068 (-)
deaf1 deaf1,LOC107726848 other upstream 2238614 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 2788908 24791192 ~ 24798616 (-)

Expression


Co-expression Network