LOC111193113


Basic Information

Item Value
gene id LOC111193113
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 23995410 ~ 23999176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650268.1
CTAGAGGTAGAGTCTTCGCAGTAAGGACTGGAGTGACGGTGAGTGTCTTCTACAGATCATCAAAGCAGGGGTTAACAGGAAAATACAGGgaTGTGAGCAGGTGCTGCTTTACCTGTGGAGCTGCCTGGTTATGAGGGGGATGTCCTGTGGACTGCTGCTGTGGAGGCTGGCAGGAGGTCGTGAGCAGCACGGTTTTACCGTCTGCGACTGCCTGCACTGTCTGCAGCTTGATCTCTGGCTCCTGCTTTACCAACAGCTCCTTCCTCAACTGCTCCACAACCTTTTTCTGGTGggggggagtgagagagaaatgacatttaaataatCTCTTCAAAAGGTGATTTTACGGATGGATGAATTCTGGGAAAGCATAAGTAAATCCCTGTTGTTTCCACCCACCACCACCCTATTCTTTTTTTCCAAGTCTGTAATATAGCCAGGTTTAGATTCACTGGGTTTTTCTGTCCACTGCAGACATGGCTTCTGTTCAGCTCAGAGACAGTCAGTGCCAAAAGATCTCTCAGGTGTGAAGCACAGGCAGAGGAACCTATTCAATGAAGGCCGTGGGAGTCactccacatacacacacacacacgcattgaAATTCATCTCACACACTCCACTGCCTCAGAGCACACTGGAGCCAAAGCATACCTCTGAGAGGACTGAAACACACATGCaggcacatatacacacacacacacacacacacactcaatctaGAAGATTTTGAAGCAAAGTTATTGCATAGTTTGGACAAACCTAATTAGCGATATAAAACTGTACataaacactgcatttttatttatatttagggAGCTACATAATATGAACTCATGAAGTAGCAAAAGTAGCAATTCTAGACTACACAGACTACAAACACATTTTGTAATCTTCCATTGaaatataaacttaatttaGTGGAAACACTTTAAGCCTTAtcttattatgtttattaaaggtCCATGTTCAACATTTTTCTTGCATTTTCAAAATCAGCATTTTGCTTTGCCCTAGAATAAAAAATGTGTCAAATTCAAAACCCCACGACTGTTTAGTGACCCCCAAGAATTCCCATCCTTTCATATCTCATAGACCAGTTAATCCACCACAGTACTTGCCATGGTCAACACGAAAGTGtctttaaccatttaaaatataaacaaatacataaagCATCAGTGTAGCCAAATAAATTGATTGAAGTGAATATAGTAATTTTTAATGGGTAAAACTCCAGGGTAAATGTTTTGCCCTGAACTGCACTAAATCAGGAGGAGTACGTTTAATGACAGGCTGCAGTACCGGATCTGCTCAACGGACAGATTGAGAAGATCTTTCATCCCCAGAGTTATCAGTATTTTTAGCTCTTTCCATTGGGGACAAGACACTGCTACAAGACCCCCACAATTTTTTGAAAGAAACGCATCACAGTTGCAAGTTTGTACTACAATACAGATATTATATAAATTTACAATCCGAGCAAAGATACAAGCAATGGTCGCAGGTCATAAACATGCTAATCGTATGTGTATTTGATTTGTAGTTGCATTCCTGTTTAATAAGTTGGTTCTGTTCACCAGCAGAGTCAATTCCATCTGACTCAGGAGGTGTGGAATAGCAtcctgctaaccacagctgtaCTAAACTCCCAGACTAATCTCTCTACTCTGAAGGGAAGATTGACTGTTCCCTCATTGGTTCAATGGTTCCAACTTTACAATAAATTACATATGTAGCATGTTTTTATGTTGCATTTTAACATAAGGCAGCAGCAGTCCTCATGCCTTCCCGAAATTGTGGTAATAAAACCAGCTAACCAAAGCAAacctcatttaattttttaaaaccacAACATATAGGAAACATAAGTTTCCTTTGATGGCTTTCAAAATTATTGTTAAAACTTAGGATGCACCACAGTGTTATTCTACATAAATACAATTGATATTTGATACTTaatattttcttcttttgtcagctttttgaaaaagaaaaaaaaaga

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650268.1 True 2005 lncRNA 0.40 2 23995410 23999176

Neighbor

gene id symbol gene type direction distance location
LOC103036104 LOC108432677,LOC108274966 coding downstream 21075 23925268 ~ 23974335 (-)
LOC103039841 mdkb,LOC103039841,LOC108432678,LOC107569721 coding downstream 73188 23915791 ~ 23922222 (-)
kcnc1 kcnc1,kcnc1b,LOC107673294,LOC107559979,LOC107569720,LOC107750713 coding downstream 222741 23747948 ~ 23772669 (-)
spg11 spg11 coding downstream 577265 23370623 ~ 23418145 (-)
LOC103035716 znf609,LOC108275264,LOC107695009,LOC107756519 coding downstream 848880 23025246 ~ 23146530 (-)
LOC103039440 LOC103039440,LOC108432681,LOC108275367,LOC105892437,LOC107569705,LOC107670205,LOC107673304,LOC107559992 coding upstream 38081 24037257 ~ 24043153 (-)
LOC103033668 LOC108432685 coding upstream 151249 24150425 ~ 24156021 (-)
LOC103025218 NA coding upstream 157963 24157139 ~ 24180647 (-)
LOC111193112 NA coding upstream 185393 24184569 ~ 24188202 (-)
pgghg pgghg coding upstream 263571 24262747 ~ 24274199 (-)
G76069 NA non-coding downstream 7883 23986749 ~ 23987527 (-)
G76042 NA non-coding downstream 84905 23900642 ~ 23910505 (-)
G76040 ambra1,LOC108432675,LOC107740878,LOC107559958,LOC107569709,LOC107720791 non-coding downstream 99199 23895354 ~ 23896211 (-)
G76035 glce,glcea,LOC108274589,LOC107569710,LOC107740877,LOC107670231,LOC107673273 non-coding downstream 109238 23881814 ~ 23886172 (-)
G76023 NA non-coding downstream 151002 23843055 ~ 23844408 (-)
LOC103037768 NA non-coding upstream 10794 24009970 ~ 24016230 (-)
G76086 prdm11 non-coding upstream 23953 24023129 ~ 24029595 (-)
G76080 arpp19,LOC107569706,LOC107740885,LOC107720800,LOC107670207,LOC107673248 non-coding upstream 49400 24048576 ~ 24050518 (-)
G76104 LOC108432640 non-coding upstream 71522 24070698 ~ 24071676 (-)
G76125 NA non-coding upstream 106325 24105501 ~ 24109860 (-)
LOC103042310 ucmab,ucma,LOC107720768,LOC107569716,LOC107673257,LOC108275358,LOC107559968 other downstream 162342 23827214 ~ 23833068 (-)
LOC103033738 LOC103033738,LOC108444230,LOC106560753,LOC105008418,LOC108274439,LOC107549618,LOC107686877 other downstream 629194 23324577 ~ 23366216 (-)
LOC103024007 LOC108428399 other downstream 1421397 22442736 ~ 22574013 (-)
LOC111193105 LOC102794092,LOC108274651,LOC107571202,LOC108428364 other downstream 2722393 21269504 ~ 21273017 (-)
gatd1 pddc1,LOC102788149 other downstream 2924164 21065319 ~ 21071246 (-)
deaf1 deaf1,LOC107726848 other upstream 241722 24240898 ~ 24260530 (-)
LOC103025724 tmem80 other upstream 792016 24791192 ~ 24798616 (-)
G76377 NA other upstream 915122 24914298 ~ 24920365 (-)
G76424 NA other upstream 1185033 25184209 ~ 25184469 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other upstream 1283613 25282789 ~ 25301768 (-)

Expression


Co-expression Network