LOC111193116


Basic Information

Item Value
gene id LOC111193116
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25639947 ~ 25641133 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650276.1
GTCTGCATTACCAGccagtgctggatgttaaactCATGTTATGCTATTGTGGCgataatattatgtatatttatatattatatattatttatatatgattattattactacattattGTGCTAACATTGGgctaacattttaaatgtaaacaaattgCACTGGGCAAGTTACCTAGGATACGGTGGTGACATCACCAAGCCACTGTACATAAGGACTTGTGTCTCTTATTATTCCATCAGTAGGTGACTATACACCTACTGTATTGGACAACTGAGGCTGATCTCCATTTAAAAATGGATTTTTGCGGAAACTTTAAACCCTTTTTTCCACCGCTGCCGCCCTCTGGACCTCGTCCCATCAGGCCCAAGACTCGCAGGGGTCTGAAGGTGCTGAAACTGAGGAGTTCCTTTCCAGACCGTTTCCTCAGCACCCCGCTCCTCCACCTGGACCTCCGCCTGTCACTACCCAGCCAGACATGGTGAATAAAGCGCCGGCCTACTATTCACCGGgTAGCAGGATCCCGATCCTAGACAGGCGGAGGAAGCAGAGGCCTGCTGCAGGATGAGGAATGGGAAAGAAAAACCGAGGGACTGCGGCTTGTGCGAGCTCTGGCTGAGCACCATGCTGATGTGGTGCTGCCGGAGCTCCACAGCGTCAGCACAGCCGTCATTGAGGAGATAAAAAACCTCAGGACAATAGTCTCTCGGGACGCCATTTACACCATGGCTCACCTGTTCCATCACCTGCAGCACAGTATGGACAGCGAGGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650276.1 True 772 lncRNA 0.48 4 25639947 25641133

Neighbor

gene id symbol gene type direction distance location
bbs4 bbs4,LOC107754319,LOC107701057 coding downstream 8176 25615420 ~ 25631771 (-)
LOC103047119 neo1,LOC108275206 coding downstream 78000 25351525 ~ 25561947 (-)
mpi mpi,LOC106560745,LOC106584640 coding downstream 312394 25317126 ~ 25327553 (-)
LOC103023960 kiaa1644,LOC108274641 coding downstream 538847 25013293 ~ 25101100 (-)
LOC107197705 NA coding downstream 689925 24949044 ~ 24950022 (-)
adck2 adck2,LOC107669038 coding upstream 14632 25655765 ~ 25661625 (-)
mrps35 mrps35 coding upstream 203484 25844617 ~ 25857522 (-)
cdkn1b NA coding upstream 431964 26073097 ~ 26077993 (-)
yars2 yars2 coding upstream 438243 26079376 ~ 26085001 (-)
LOC103026228 LOC108429453,LOC107558597,LOC107549599,LOC107701195,LOC107668648,LOC105913426 coding upstream 450129 26091262 ~ 26134844 (-)
LOC111193115 NA non-coding downstream 814 25637072 ~ 25639133 (-)
G76585 adpgk,LOC107549595,LOC107745566,LOC107569355 non-coding downstream 24596 25612125 ~ 25615351 (-)
G76579 NA non-coding downstream 43284 25596425 ~ 25596663 (-)
G76570 NA non-coding downstream 75517 25529824 ~ 25564430 (-)
G76453 NA non-coding downstream 401934 25236454 ~ 25238013 (-)
G76595 NA non-coding upstream 72350 25713483 ~ 25713920 (-)
G76676 NA non-coding upstream 121389 25762522 ~ 25830697 (-)
G76701 NA non-coding upstream 437305 26078438 ~ 26079115 (-)
G76706 NA non-coding upstream 446219 26087352 ~ 26102108 (-)
G76707 NA non-coding upstream 504496 26145629 ~ 26146804 (-)
rab3il1 rab3il1,LOC108429468,LOC107549590 other downstream 338179 25282789 ~ 25301768 (-)
G76424 NA other downstream 455478 25184209 ~ 25184469 (-)
G76377 NA other downstream 719582 24914298 ~ 24920365 (-)
LOC103025724 tmem80 other downstream 841331 24791192 ~ 24798616 (-)
deaf1 deaf1,LOC107726848 other downstream 1379417 24240898 ~ 24260530 (-)
LOC103031319 coro2b,LOC108412540,LOC105018662,LOC107549656,LOC107738688 other upstream 1215496 26856629 ~ 26878862 (-)

Expression


Co-expression Network