trnaw-cca_42


Basic Information

Item Value
gene id trnaw-cca_42
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4924000 ~ 4924071 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnaw-cca_42
GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaw-cca_42 True 72 tRNA 0.58 1 4924000 4924071

Neighbor

gene id symbol gene type direction distance location
LOC103026470 LOC108435611 coding downstream 461028 4447172 ~ 4462972 (-)
LOC103042532 LOC108442489 coding downstream 1013471 3862118 ~ 3910529 (-)
LOC103024174 LOC108442487 coding downstream 1415004 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 1516569 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 1577524 3336209 ~ 3346476 (-)
LOC103041488 NA coding upstream 34034 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 37518 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 90801 5014872 ~ 5046137 (-)
nudcd2 nudcd2 coding upstream 206531 5130602 ~ 5137613 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 487645 5411716 ~ 5422882 (-)
G71309 NA non-coding downstream 2181 4919555 ~ 4921819 (-)
G71237 NA non-coding downstream 37539 4886188 ~ 4886461 (-)
G71222 NA non-coding downstream 181487 4695742 ~ 4742513 (-)
G71210 NA non-coding downstream 245251 4678391 ~ 4678749 (-)
G71205 NA non-coding downstream 254322 4669422 ~ 4669678 (-)
G71305 NA non-coding upstream 9386 4933457 ~ 4935045 (-)
G71308 NA non-coding upstream 12566 4936637 ~ 4939375 (-)
G71315 NA non-coding upstream 16837 4940908 ~ 4941780 (-)
G71316 NA non-coding upstream 19232 4943303 ~ 4954873 (-)
G71319 NA non-coding upstream 32225 4956296 ~ 4980099 (-)
G71235 NA other downstream 39512 4882170 ~ 4884488 (-)
G71175 NA other downstream 510989 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1075376 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1220249 3575561 ~ 3703751 (-)
LOC111193045 LOC108442482,LOC102793828 other downstream 1465190 3444095 ~ 3458810 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 547595 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 905550 5829621 ~ 5841707 (-)
G71771 NA other upstream 1853168 6777239 ~ 6824756 (-)
G71826 NA other upstream 2133039 7057110 ~ 7057643 (-)
G71862 NA other upstream 2385704 7309775 ~ 7312926 (-)

Expression


Co-expression Network