G7413


Basic Information

Item Value
gene id G7413
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 2877604 ~ 2878275 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU10098
ataattatataaaaataatataaaatatataaaaaataaattatataaaaataatataataatacttatacgtatgtacctgttttttttaaaccaaccaaaatatgttttatatacactCTATGAGGCTCctgctcatcctaaatcactcAGTtgagtttaggtcaggggattgtgaaggccatgcacctttttgtttactagacaattccatatgcgtcaattaatcgttttcatggttttaatattaatcgccaatgtaaaaaaataaaaaataaaataattaaatgagacgtgtccaacttttgactggtacttatatatttgcgagttgacacaccccagagtttgcccagatgaacggccacaatgttggttagaagcacctgaataaggaatattattaaatattacctgcacattcaccgataccctttacaatacgtaTAGGTGGgattaaagacaccgcaggcgtcccctgcaccggacctactttgcagctttgcttaaaccgtgagcatcatctgcaggaattcactgattgcatttcttgcagcattaatgtcaaGAACTCTAGCATcgctaatctggattttaatgatttattcgtgggtttgattggtcaattccaatatgcccagttatactacaagccacagacaaagttggcat
>TU10101
ctgctcatcctaaatcactcAGTtgagtttaggtcaggggattgtgaaggccatgcacctttttgtttactagacaattccatatgcgtcaattaatcgttttcatggttttaatattaatcgccaatgtaaaaaaataaaaaataaaataattaaatgagacgtgtccaacttttgactggtacttatatatttgcgagttgacacaccccagagtttgcccagatgaacggccacaatgttggttagaagcacctgaataaggaatattattaaatattacctgcacattcaccgataccctttacaatacgtaTAGGTGGgattaaagacaccgcaggcgtcccctgcaccggacctactttgcagctttgcttaaaccgtgagcatcatctgcaggaattcactgattgcatttcttgcagcattaatgtcaaGAACTCTAGCATcgctaatctggattttaatgatttattcgtgggtttgattggtcaattccaatatgcccagttatactacaagccacagacaaagttggcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10098 True 672 lncRNA 0.51 1 2877604 2878275
TU10101 False 541 lncRNA 0.56 1 2877735 2878275

Neighbor

gene id symbol gene type direction distance location
LOC111194262 NA coding upstream 381648 2495303 ~ 2495956 (+)
LOC111194261 NA coding upstream 382522 2492574 ~ 2495082 (+)
LOC103036218 NA coding upstream 634090 2230650 ~ 2243514 (+)
LOC103039045 znf207,LOC108444040,LOC108278632 coding upstream 654336 2213921 ~ 2223268 (+)
LOC103039361 slc25a23b,LOC108444036,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC108274688 coding upstream 673025 2160815 ~ 2204579 (+)
LOC111193070 NA coding downstream 9346 2887621 ~ 2902359 (+)
LOC111193073 LOC108412732 coding downstream 24800 2903075 ~ 2918837 (+)
LOC103026461 LOC103026461 coding downstream 95738 2974013 ~ 2975368 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding downstream 187000 3065275 ~ 3101997 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding downstream 227916 3106191 ~ 3136201 (+)
G7401 NA non-coding upstream 80664 2796709 ~ 2796940 (+)
G7393 NA non-coding upstream 101239 2775576 ~ 2776365 (+)
G7383 NA non-coding upstream 133614 2743700 ~ 2743990 (+)
G7379 NA non-coding upstream 139379 2737873 ~ 2738225 (+)
G7329 NA non-coding upstream 183998 2693290 ~ 2693606 (+)
G7447 NA non-coding downstream 48046 2926321 ~ 2929538 (+)
G7448 NA non-coding downstream 49264 2927539 ~ 2928677 (+)
G7465 NA non-coding downstream 99575 2977850 ~ 2978174 (+)
G7466 NA non-coding downstream 99965 2978240 ~ 2978439 (+)
LOC111194151 NA non-coding downstream 140843 3019118 ~ 3019508 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 35390 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 319260 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 797063 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 830041 2039387 ~ 2047563 (+)
G7109 NA other upstream 1532173 1340206 ~ 1345431 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 570946 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 1046010 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1874521 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 2307259 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 2453790 5332065 ~ 5339089 (+)

Expression


Co-expression Network