CI01000009_07111833_07115320


Basic Information

Item Value
gene id CI01000009_07111833_07115320
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 7110351 ~ 7115443 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_07111833_07115320.mRNA
GTATAAAAAGCATCCACAAGGACTCAAGTACACACGAAACAGGCTCACCTACCCGATTCTATATGAAAATTCCCCAAAGAGCCGGTTAGTGGGGAGGAAAACGCCACAGAGATGTTTGGAGCGCTGAGGAGGACTCTGCTCTATAATGAGGGACCGTTATTCCTGATGGACAGGTTTGGACTGATCTCTGGCGGGATAGATGGAGAAACGCCGAGGTCGTCTGATGAACCAGATCAGGTGCTCGCGTCTATCGTTCTGCAACACAGGTGGGGCTTTGGAAAGTGCGTGCAGCAAGACTGTGACCTCCTGACCCTCTCTGAAAGACATCAGGACAGCACAGATGGAAGGCACACCTTAGCCCCTGTATGATTCACTTTCGTTCTGATTACTGCTTTAATATGGTGTAACAGCTCTTTTCCTGCCCAGGTTCCTGTTTAGAGGCCTTCCTGTAAATGTCATGTGTTTCCATGA
>TU62180
CTTTCTCCTCGGGTTGGCCTGTTTTCTCCTCTTACACCGGGGACCCTCCGCCATGATCTCCTGCTTCATTGATAAGAGTGGGTCAGATGGCAGCAGTCCGCATGGGCTCCGCTCCTTCATCCAAGATCTAGCAACCAACACACACACGGCAACAATTGGACTCTCAGGGCAGGAAGGAGGATGTGTGTCGCTCACAGGAGAGCAAATGATATTTGGGGGGTAGAGTGACTGAGACGTCCGAATGAAGTTATCCAGGAGGGTTTGTTTAGAGGGACCGTGAGCGTCCTGCGCGTCGTCTGATCTTTTGAAGTGTGTGTGTGTGTGTGTGTGATCGGACAGCAGCGCGTGAGTGCGCGAATGAAGGGGGACGGACACACCGACACCTTCAAGTCACCATAAAGCATGTGCGTATAGAGCATATCATAGAATGAAAAGCAATGAAAGTTTCCGGCAACTTGTGTTTAGTGGACATGCTTTATGTAGTTTATTTTCTTTTCACTTTTCTCTCTCTTTGCTTTAAGTTGTTATAGACATCAGATCGTGTGAGCTACTTTCTTTTTGAGTCTGATGGATGTAAATATTGGCTTCATAATTTGCCCACTGTCTGACTGTTATAGATTGACCGAATTTAATTAAGCATAATTACTTTTCCTCGGAATTGGCATGAGATTCCAGTTAGTTTATGTTTTAAAGTAACTACTAAGAGATACGGTGTTGATTAAAAATGTTTGCATATAGTTCCCTTTTTTAAATTTATTTATTTTTCTTTAGAAAATATGAAAAGGGTCCAAAACATTACGTGTTGCATTTGTCTTCTAATAATTACTTATAATAAGCTAAATCTTACATTCGAAAACTATAATAGTCAGTTTATTACAATGTAACAAAATGTGCAGCATTGTGCAGGCGAACCCTTAAAATAACACGGAATAAAAGCATGATAAACAAATAAATAAACAAGGTACATTAGCCTCTCGTCACATGCAAGTCTCGAACAATTCGTAAATACTTTTAAAATTTAAATGATTTTTTTTAGCTTATTTACGCAATCAAATATGTTTAAATATTTAACCTAAAACTATAAGTCATGTACATAAAATCGAAAATAAGATTGAAATGAGATGCAGATAAAAAAGAAAAAAAAGAAAAAGTGTTGTGTTGTTTTCTAAAGGGAAAGCATCCGTTTATGAGATCTACGTAAACATGCACTGATAAATTTAACGAGCGACATCATCACCACCATCCCTGCGTGAAGCTGCCGGTGTGTCAGCATCCGTGAGGCGCGCGCACCTTTCCCACCTGAGCCGGCTGAAGCCAAGTTGATTGCAATCTCATATTCGGGAGGGGGTTTAAAAAAAAGTCAAATAGGCTGTATAAAAAGCATCCACAAGGACTCAAGTACACACGAAACAGGCTCACCTACCCGATTCTATATGAAAATTCCCCAAAGAGCCGGTTAGTGGGGAGGAAAACGCCACAGAGATGTTTGGAGCGCTGAGGAGGACTCTGCTCTATAATGAGGGACCGTTATTCCTGATGGACAGGTTTGGACTGATCTCTGTGAGCCACAACACGGAACAAACCTGAGGACGCACTGACGTGTTCCGCCTCTTCAGATGACATTTCTGCGCTCTCTCTTTTACTTTTGCGCTCCGAGACTCTGACACACACGCCACCTATCTTTACAGGGCGGGATAGATGGAGAAACGCCGAGGTCGTCTGATGAACCAGATCAGGTGCTCGCGTCTATCGTTCTGCAACACAGGTGGGGCTTTGGAAAGGTGAGGCTATATGGACATTCTATCCTATAAACGGAACAAAGCAAGAATGGTTAGAACTCGAGCATCGACAGCATGATCTTAAGGAAGAGGAGCTGAAAAGATGCATGAGAGGCTGCCGGTGCTGCACTGACTGATCTGACAGTGCGTGCAGCAAGACTGTGACCTCCTGACCCTCTCTGAAAGACATCAGGACAGCACAGATGGAAGGCACACCTTAGCCCCTGTATGATTCACTTTCGTTCTGATTACTGCTTTAATATGGTGTAACAGCTCTTTTCCTGCCCAGGTTCCTGTTTAGAGGCCTTCCTGTAAATGTCATGTGTTTCCATGAATAAATCAGACTTTATGACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_07111833_07115320.mRNA False 471 mRNA 0.49 3 7111722 7115422
TU62180 True 2133 lncRNA 0.43 2 7110351 7115443

Neighbor

gene id symbol gene type direction distance location
CI01000009_07101768_07105835 NA coding upstream 5713 7101269 ~ 7106009 (+)
CI01000009_07091022_07092696 NA coding upstream 18921 7090918 ~ 7092801 (+)
CI01000009_07051811_07054331 NA coding upstream 57097 7050718 ~ 7054625 (+)
CI01000009_06975071_07009147 ARHGAP15 coding upstream 102305 6975071 ~ 7009417 (+)
CI01000009_06943591_06952628 NA coding upstream 158655 6941624 ~ 6953067 (+)
CI01000009_07316335_07346664 ACVR2A, ACVR2AA coding downstream 200913 7316335 ~ 7346664 (+)
CI01000009_07361747_07377615 EPC2 coding downstream 246325 7361747 ~ 7378451 (+)
CI01000009_07392574_07395739 MED4.S, MED4 coding downstream 277059 7392481 ~ 7395770 (+)
CI01000009_07440170_07459782 HTR2A, HTR2AA coding downstream 324617 7440039 ~ 7460409 (+)
CI01000009_07490344_07493862 ESTD, ESD coding downstream 374826 7490248 ~ 7493862 (+)
G54694 NA non-coding upstream 153794 6957719 ~ 6957928 (+)
G54687 NA non-coding upstream 165681 6945823 ~ 6946041 (+)
G54626 NA non-coding upstream 170930 6896121 ~ 6940792 (+)
G54627 NA non-coding upstream 198126 6805307 ~ 6913596 (+)
G54433 NA non-coding upstream 478944 6632544 ~ 6632778 (+)
G54752 NA non-coding downstream 5073 7120495 ~ 7120779 (+)
G54779 NA non-coding downstream 41459 7156881 ~ 7157158 (+)
G54946 NA non-coding downstream 86268 7201690 ~ 7201927 (+)
G54952 NA non-coding downstream 95980 7211402 ~ 7211650 (+)
G54958 NA non-coding downstream 109719 7225141 ~ 7227087 (+)
G53651 NA other upstream 863330 6245564 ~ 6248392 (+)
CI01000009_05931829_05943829 KCNH3 other upstream 1178921 5931718 ~ 5943899 (+)
G53388 NA other upstream 1572668 5522242 ~ 5540638 (+)
CI01000009_03202999_03207060 MPC2, MPC2.S other upstream 3902738 3202207 ~ 3208984 (+)
G51529 NA other upstream 4049135 3062033 ~ 3062587 (+)
G56100 NA other downstream 2013878 9129300 ~ 9130286 (+)
CI01000009_09853929_09854476 SAP18 other downstream 2737937 9853929 ~ 9856587 (+)
CI01000009_11761868_11765848 ORMDL1.S, ORMDL1 other downstream 4645364 11761606 ~ 11766944 (+)
G57811 NA other downstream 4818520 11933942 ~ 11935251 (+)
CI01000009_12432736_12435509 NA other downstream 5317136 12432538 ~ 12436017 (+)
CI01000009_06212264_06213131 NA coding upstream 856936 6212264 ~ 6213815 (+)
CI01000009_06205817_06207701 TEX30 coding upstream 863040 6205817 ~ 6207711 (+)

Expression


Co-expression Network