G7526


Basic Information

Item Value
gene id G7526
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3188314 ~ 3192875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU10260
ACTGACAAGGACAATGTAACAGTTAGAAAATTAGTTAGAGGTTCAGATACACTCTTATTTATAGTTTACgggcatataaaaaaataggataCCACATTAAAACCTTTGTGTTTTGACATATTTATACATGTAGACATTTGATCTTCATTTCAACAATATTGAGAGATGGagataataaacacataaagctgattttctccccaatttacaagaaCTCCcattatcactagtaatgccccaacaccaggagggtgaagactagcacatgcctcctccaatacttgtgaagtcagccaccgcctctttttgagctgctactgatgcagcattgccgagtagcatcacagtgcgctcggaggaaagcgcagcgactcggttccgatacatcagctcacagatgccttgtgctgatcaacatcaccctttggagtgatgtggaagagagagcgccatctatccacccagagagagcaaggtcaattgtgctctctctgggcttcggcagctgatggcaagctacatgaaaaGGATTAGAACCAGTAATctcttattaaatgtaattagtgGAAATTCAGTTTTCTAATAGGGAAAAAGTAAGGACACTCCAACATTTATAACTAGTTAAAATCCCCAAAAAGTTAAAATCTACATTTATTCTCATAATTGAACATAAAAACCCAGAATTTCACACAGCAATTTGTTTACATTATCCTGCATTAATAAcactcttccacatgctctaTGCAATTACATATTCTAACCAGGGatgtctctaaatccccaattattcccaaaacttacagactgttgctttaataGACATTTCTTCAGTTTTGTGTTTAGTTCCTTTATCTCCATCTCTCAGTACTGTTCAAATGAAGGTCAACAGaccatatgtttaaatatgattaaaaatgccaaagttttttttacagaatgtcCTTACGTTACATAACTGTACTTAAAACAATcaaattgcatttaaataaatattataaatttctCATTTCCATCGGTTAAAAACACAGAACGCTTCAAACTAAAAGACAGTTAATTCATTCACACCATACAGCATGACTCCGGCCAGATATGATCATCTCTAACAACACTATAGAAAGAGTGGAAGTCAAGAGTCTGTGAAACTGCTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10260 True 1150 lncRNA 0.37 2 3188314 3192875

Neighbor

gene id symbol gene type direction distance location
LOC103027967 LOC108434915 coding upstream 27621 3144487 ~ 3160693 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding upstream 52113 3106191 ~ 3136201 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding upstream 86317 3065275 ~ 3101997 (+)
LOC103026461 LOC103026461 coding upstream 212946 2974013 ~ 2975368 (+)
LOC111193073 LOC108412732 coding upstream 269477 2903075 ~ 2918837 (+)
LOC103029856 cacng2a,cacng2,LOC107680886,LOC107561356,LOC107687643,LOC107732897,LOC107729558,LOC108434911 coding downstream 106463 3299338 ~ 3423252 (+)
ifi35 NA coding downstream 380367 3573242 ~ 3587765 (+)
LOC111194267 LOC101882592,LOC106911506,LOC107698541,LOC107722802 coding downstream 435812 3628687 ~ 3644274 (+)
LOC103039250 LOC108434931,LOC108278793 coding downstream 449258 3642133 ~ 3656619 (+)
LOC103042028 NA coding downstream 547560 3740435 ~ 3779695 (+)
G7518 NA non-coding upstream 16741 3163133 ~ 3171573 (+)
G7492 NA non-coding upstream 43936 3140081 ~ 3144378 (+)
G7485 NA non-coding upstream 51520 3075725 ~ 3136794 (+)
LOC111194151 NA non-coding upstream 168806 3019118 ~ 3019508 (+)
G7466 NA non-coding upstream 209875 2978240 ~ 2978439 (+)
G7531 NA non-coding downstream 66319 3259194 ~ 3263791 (+)
G7587 NA non-coding downstream 202720 3395595 ~ 3397290 (+)
G7603 rpl27,LOC106601555 non-coding downstream 301496 3494371 ~ 3497856 (+)
G7636 NA non-coding downstream 333755 3526630 ~ 3567805 (+)
G7637 NA non-coding downstream 340496 3533371 ~ 3535093 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 346100 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 629970 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1107773 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 1140751 2039387 ~ 2047563 (+)
G7109 NA other upstream 1842883 1340206 ~ 1345431 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 256346 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 731410 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1559921 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1992659 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 2139190 5332065 ~ 5339089 (+)

Expression


Co-expression Network