G7531


Basic Information

Item Value
gene id G7531
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3259194 ~ 3263791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU10265
CTTTTACACTCAGTGGACAAACAATAAAAGGTGAAAACCACTGGAAGTTGTGTTTTGGTATAGCATTACCAAATTATGTTACTTAAAACACCAGTCAATGTAATtctactatttatttaaatatactaaacTAATTCTTTAAAGTCAACATTTTTGAGAAAGTAAAGGTGTACCATCACAGATTGAGATTGAACAGTACAGATATTATAGCTGCCATCTCACCCATTTGCAATGGGATTCACTATTTCCTTCCACAGAAACTCACCCAGCCACTGGGTGGACGGAGCAAGTGGTTTTTAGGAGGAGTTAGgaaaaatattcaatatttctAGGCCAATAAAGCCTTCAACAAATCAATGACACAGAGCCACACAAGTTAGAAAAGCCTGCAATGCATACTACTAAATTAACTGAACAGCTCAATAGAACACATGCAAAATGCCTCAAGTAACAGATTTCAAACTGAATTCAACTCACCTTTCATTTCACCCTTGTTATTCACTATGACCCCCGCATTGTCTTCAAAGTATAAGAACACACCATCTTTTCGCCGGTACGACTTCCGCTGTCGAATCACCACCGCAGGATGcACCCTTTTTCTTGAGCTCTGGTTTGCCTTTCTTCACAGTGGCCATAACCATGTCACCAACACCTGCAGCAGGGAGCCTGTTCAGACGACCCTTGATACCTTTGACGGAGATGATGTACAGGTTCTTGGCACCTGTTGTCAGCACAGTTGATGACCGCTCCCACTGGGAGACCCAGTGAGATGCGGAACTTGGCTCCAGATGCTCCACCACgtcctgaaagagagagatcacCATTTATTTAATCACTGACAGATTTGTTACGTCAACCAAGCTCACACCACCAAATtcagtaaatgtaaattaacGTGTACCTGTAGGTTATGTGCTTGAAAAAA
>TU10266
CTTTTACACTCAGTGGACAAACAATAAAAGGTGAAAACCACTGGAAGTTGTGTTTTGGTATAGCATTACCAAATTATGTTACTTAAAACACCAGTCAATGTAATtctactatttatttaaatatactaaacTAATTCTTTAAAGTCAACATTTTTGAGAAAGTAAAGGTGTACCATCACAGATTGAGATTGAACAGTACAGATATTATAGCTGCCATCTCACCCATTTGCAATGGGATTCACTATTTCCTTCCACAGAAACTCACCCAGCCACTGGGTGGACGGAGCAAGTGGTTTTTAGGAGGAGTTAGgaaaaatattcaatatttctAGGCCAATAAAGCCTTCAACAAATCAATGACACAGAGCCACACAAGTTAGAAAAGCCTGCAATGCATACTACTAAATTAACTGAACAGCTCAATAGAACACATGCAAAATGCCTCAAGTAACAGATTTCAAACTGAATTCAACTCACCTTTCATTTCACCCTTGTTATTCACTATGACCCCCGCATTGTCTTCAAAGTATAAGAACACACCATCTTTTCGCCGGTACGACTTCCGCTGTCGAATCACCACCGCAGGATGCACTTTTTCTTGAGCTCTGGTTTGCCTTTCTTCACAGTGGCCATAACCATGTCACCAACACCTGCAGCAGGGAGCCTGTTCAGACGACCCTTGATACCTTTGACGGAGATGATGTACAGGTTCTTGGCACCTAACAAATGTCAAAAACATATGTTTATGTTACAAAAACACTTTACATAAACAgttatatgacaatattttctcAAATAGCAAGAGCAGGCTGCTGAATGCATAAGTTCTTTAAGGTGTTCCATCACCGATTGAGATTTAACAGTTACAAACAAAGCTGCCATCTCACCCTTAAGCAATGGGATTTATTATTTCCTTCCACGACAACTCACTCAGCCACTAAACAGACGAAGCAAGTGCTTTTTAGAAGGAGTACAGTAgagtaatttttttgttttacatattgCCAAAAGTGCTCTTACAGATCCCTAAATAATCCTATATGCAAGGGAGTGTGTACATTTTATTCCAAGACATTTTGGATAATTTCTATTTGTGCCTTCCCTGCACATTTGACAATGTAtaacttattatataataattaaactaCATTGATTTCTCTTTATCCAGCAACAATTCACACTGCAGTGAACAATGAATAGAAGGTGTGACAGCAATggcaaatgaaaaataaatgttaactaACATCTTACAAAGCAGGGCAActgtaaaactattaaaatcagCACCCTGTTACAAACAGATTTTATAAACTGGTCAGCAACATGCTGCCTTACCTGTGTTGTCAGCACAGTTGATGACCGCTCCCACTGGGAGACCCAGTGAGATGCGGAACTTGGCTCCAGATGCTCCACCACgtcAACAGCCGCTGAAAAGCTTCTCAAAACAGGTTTTGGCCTAAAACACCTTCCACCGCTCCCCGCTGAAGAGCCGCCGCTCCGTTCCTCCATCAGCGCCAAAACTTATAAACCATTATCatcaaaattaaaactaaaactgcCTCCATACTGTCCAAACCGAAATCAGAAGGGCTTTGTATTATAGTTAAACATCGCAGTGTGAGTTTAAAGGTGTTATAAAGAGAGGATTAAAGCGGATTCAGAGACAGGCTCGCTCACCTCTCTTAGACATCGCGGCTGGAAAGAGAAAGGAAGGAGGAGAGGGGAGCGCTCGGAAATGACGCTCCGGCTCTCCGCTTTCAGCGCCACGGCGGCCCCTGCAGGCGGAGGAGCGAACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10265 False 925 lncRNA 0.41 3 3259194 3262112
TU10266 True 1798 lncRNA 0.41 3 3259194 3263791

Neighbor

gene id symbol gene type direction distance location
LOC103027967 LOC108434915 coding upstream 98501 3144487 ~ 3160693 (+)
LOC107196972 mpp2a,LOC108434916,LOC108276091,LOC107737744,LOC107582977,LOC107758486,LOC106600860 coding upstream 122993 3106191 ~ 3136201 (+)
LOC103026748 pyya,LOC108434917,LOC108276154,LOC107689636,LOC107583099,LOC107758485 coding upstream 157197 3065275 ~ 3101997 (+)
LOC103026461 LOC103026461 coding upstream 283826 2974013 ~ 2975368 (+)
LOC111193073 LOC108412732 coding upstream 340357 2903075 ~ 2918837 (+)
LOC103029856 cacng2a,cacng2,LOC107680886,LOC107561356,LOC107687643,LOC107732897,LOC107729558,LOC108434911 coding downstream 35547 3299338 ~ 3423252 (+)
ifi35 NA coding downstream 309451 3573242 ~ 3587765 (+)
LOC111194267 LOC101882592,LOC106911506,LOC107698541,LOC107722802 coding downstream 364896 3628687 ~ 3644274 (+)
LOC103039250 LOC108434931,LOC108278793 coding downstream 378342 3642133 ~ 3656619 (+)
LOC103042028 NA coding downstream 476644 3740435 ~ 3779695 (+)
G7526 NA non-coding upstream 66319 3188314 ~ 3192875 (+)
G7518 NA non-coding upstream 87621 3163133 ~ 3171573 (+)
G7492 NA non-coding upstream 114816 3140081 ~ 3144378 (+)
G7485 NA non-coding upstream 122400 3075725 ~ 3136794 (+)
LOC111194151 NA non-coding upstream 239686 3019118 ~ 3019508 (+)
G7587 NA non-coding downstream 131804 3395595 ~ 3397290 (+)
G7603 rpl27,LOC106601555 non-coding downstream 230580 3494371 ~ 3497856 (+)
G7636 NA non-coding downstream 262839 3526630 ~ 3567805 (+)
G7637 NA non-coding downstream 269580 3533371 ~ 3535093 (+)
G7651 NA non-coding downstream 302878 3566669 ~ 3572239 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 416980 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 700850 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1178653 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 1211631 2039387 ~ 2047563 (+)
G7109 NA other upstream 1913763 1340206 ~ 1345431 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other downstream 185430 3449221 ~ 3452666 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 660494 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1489005 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1921743 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 2068274 5332065 ~ 5339089 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G19326 NA misc NC_056701.1 CM032070.1 12511926 ~ 12513721 (+)