G7672


Basic Information

Item Value
gene id G7672
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3666976 ~ 3667945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU10456
GAGTAACTGAAATAATTATCTAAGATTTTATTACACGCAGAATACACTTCAGCTGGCTGTACCTGCTGAACAGGACAAGGAAATGGCAGACAGAAGGcatttcagagagagagaaagagagagaaagaaagacagaaagaaagacaagtCAGAGTAGACGCATCATACAACAAGAGCTCATAAAGACAAAACAGCAGTAAAATTTGAAAATATACATAGATATACAAGAAAACAACAACTAATGGCCCATTGTGGCATACATCACACaacaaatgtaaaagaaaacaaataatgtTGACACCAGTGACCTTAACAGTGCCGTAAAACTACTTTTACAGAATCCAAAAGTGCagtttattgtaatattataaacaaatcaaaatatcagATGATTACAGTATATAGTGCCTTGCTTAAAGGTTGAGCTAACAAGGAAATGTGACGACTTAAGCTGTTGGGCATGAGGGCAAAGCCAGTTGCCATTACAACAATCTTGTATTTTAAATTATCTTCCTGTCTACAAATCGACAAGatctttactgaaaaaaaaaaataacacactaCTGAGATACTGGGATAATCCAAACTTCTTAATGGTGTGAATAGGCAAAGGATTGTGAAATAGGGATGTACATAATGAAAAAGGGTAGGAAAGGATAGAGGAAAAATTTGCAGCTTTGTTGTGACAGACCCCACGTTTAAACACAGTGCTTCATAAAACCATAAGAAAGACGATAAGAACCAGGAATAACAGAGGAGTAAATGGCTCagcatagaaaataaattatccTATATAACTGTCATAAACACTTGATAACAATCCTAGGATTGCCCCATCAATAAACCAGAGTCAGTATGTCAGTATGTTGCTTGGAAATGAGCTTCagacggtaacactttataatactgttccatagttaataggtaactaagcagtaactaattaatagtgctgcattaacacctaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10456 True 970 lncRNA 0.43 1 3666976 3667945

Neighbor

gene id symbol gene type direction distance location
LOC103039250 LOC108434931,LOC108278793 coding upstream 10357 3642133 ~ 3656619 (+)
LOC111194267 LOC101882592,LOC106911506,LOC107698541,LOC107722802 coding upstream 22702 3628687 ~ 3644274 (+)
ifi35 NA coding upstream 79211 3573242 ~ 3587765 (+)
LOC103029856 cacng2a,cacng2,LOC107680886,LOC107561356,LOC107687643,LOC107732897,LOC107729558,LOC108434911 coding upstream 243724 3299338 ~ 3423252 (+)
LOC103027967 LOC108434915 coding upstream 506283 3144487 ~ 3160693 (+)
LOC103042028 NA coding downstream 72490 3740435 ~ 3779695 (+)
phb phb,LOC107661032 coding downstream 201464 3869409 ~ 3874948 (+)
znf652 znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758 coding downstream 212585 3880530 ~ 3904749 (+)
phospho1 phospho1,LOC107745765,LOC107661127,LOC107576079,LOC107755127,LOC107689057 coding downstream 245594 3913539 ~ 3918678 (+)
tmem11 tmem11,LOC107568541,LOC107661149,LOC107552488 coding downstream 265219 3933164 ~ 3937220 (+)
G7665 NA non-coding upstream 38295 3627962 ~ 3628681 (+)
G7664 NA non-coding upstream 39102 3627648 ~ 3627874 (+)
G7663 NA non-coding upstream 39441 3626768 ~ 3627535 (+)
G7661 hsd17b14,dhb14,LOC107561364,LOC107732853 non-coding upstream 45748 3618061 ~ 3621228 (+)
G7656 NA non-coding upstream 54042 3611784 ~ 3612934 (+)
G7695 NA non-coding downstream 119960 3787905 ~ 3796690 (+)
G7772 NA non-coding downstream 187258 3855203 ~ 3856246 (+)
G7789 NA non-coding downstream 273886 3941831 ~ 3944059 (+)
G7795 NA non-coding downstream 285785 3953730 ~ 3954709 (+)
G7785 NA non-coding downstream 388913 4056858 ~ 4063296 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 214310 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 824762 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1108632 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1586435 2050283 ~ 2080541 (+)
LOC103037883 LOC105898698,LOC103360086,LOC101074561,LOC107391594,LOC102794576,LOC103154361,LOC100701095,LOC105938735,LOC105901802 other upstream 1619413 2039387 ~ 2047563 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other downstream 256340 3924285 ~ 3929242 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 1084851 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1517589 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1664120 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 2060977 5728922 ~ 5729500 (+)

Expression


Co-expression Network