G7810 (vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678)


Basic Information

Item Value
gene id G7810
gene name vatl,atp6v0c,LOC104958644,LOC103381986,LOC108242915,LOC107376678
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4071830 ~ 4095000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU10649
gtgatatttgtagtacttaaaaatatatatataaaaaatatatataaacataaataaataaacaactcaAAGAGAGGAGGAAGTTGAggaaattttatttggaaacaGGACGGGCTGGGCTGGTGTTCACCCATCAATGCAACCAGAAAACAGTAGTAACTACAGGTATAACGCTACACATGTTTAAAGAATGTCACCTTAGAATTAAAacatacacattcacactcACAAACGTATGCGTGCATACACTCACGACTGCACGCTCTGTAAACTTCCACACCAATATCTTGAAACAAACAGATCTCCATGGTAACCAATGATTACATCCAGAGGAACTCCAAGCACAAATTACCCACAGTGCAATTGACCTAcctatacagatatatatttctgatacatgtatttatatatatagatcaTTGGGATTTCAATAAAGACTTTGATCGATTTAAACAGTTTCATGAACATCTCAAAATCTTCATAAATAAATtggtgaaaaacaaaaaaaaaatatgcttctTTTCTTTACAGTTAGGTCCTCAACATCGGTGTAGTAATCAAAAATGGTCCCAAAAttgaaaaaaaggcaaaaaaaaaaagagcaaaacaaaaatgattCGTTTAAACATGaggaaaaatgacaaaataaaaacacaaacaaagaaGTGTAGtggtaggggggggggggggtcaagGAATCTACCTAAACACCAACAAGACAAGAGCACAGGCTACACAGCGCATTTACAAGGGGACGCATATCAGGCTACTATAATACACACAGAGAGGAGAGTTCGCACAGACAATTACTtgcccaccacacacacacatacatacttacatacatacgcacacttacatacatacacactcccCTCTCTTCGATTCTTGTGTTGTAGTTACTCAATGTGTTTCATTAGGTGGATGTCtgagttggtgtgtgtttgtagtgGGTGGTTGTCTgtattataataacaataataataataataattaatattttaggtAATATTTTACTTGGTGGAGAGAATAAGGGCAACAATAAGCCCGTACAGCCCCAACACTTCAGCGAAGATCAGAATGAGGATCATGCCCACAAAGAGGCGAGGCTGCTGGGCTGTGCCCCTGACTCCTGCATCTCCCACAATACCAATGGCAAAGCCAGCAGCAAGGCCACTCAGGCCCACACTCAGTCCTGCACCCAGGTGAAGAAAGCTCTTGTAGAGCGTAACCTTTTCTGAAATGTTGTTTGCAATGAGCACAGCCACCACCAAGCCGTAGATGGCTATGATACCCGCCATGACTACGGGGATGATGGACTTCATGATGAGCTCCGGCCTCATCACTGACATGGCAGCAATGCCTGTGCCACTCTTCGCTGTGCCATAGGCAGCACCCAATGCTGAAGACCATCGCTGCTGAGGCGCCCATCACCGCAAAGAAGGGGGAGTACTCGGGGCTTTCGGCGGACATTCTCCTGCTCGTTCAGGACACCGTACAGACCAACCACacggatagagagagaggggaggcgAAGGGCTCAAATGTCCTCCTAGTTGCTGATGCTGTGTCTATGTTGTTTAAGGCTGCGACTCGTCCACAGTGCCGCTGGCGTTAAAAGAGTCCAGGCTGCGAGTGCGGGAGTCGGTCACGAAGCGCAGAGACCCGGCGGAGATCTGGAAAAA
>TU10650
aaagctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagcaaaacaaaaatgattCGTTTAAACATGaggaaaaatgacaaaataaaaacacaaacaaagaaGTGTAGtggtaggggggggggggggtcaagGAATCTACCTAAACACCAACAAGACAAGAGCACAGGCTACACAGCGCATTTACAAGGGGACGCATATCAGGCTACTATAATACACACAGAGAGGAGAGTTCGCACAGACAATTACTtgcccaccacacacacacatacatacttacatacatacgcacacttacatacatacacactcccCTCTCTTCGATTCTTGTGTTGTAGTTACTCAATGTGTTTCATTAGGTGGATGTCtgagttggtgtgtgtttgtagtgGGTGGTTGTCTgtattataataacaataataataataataattaatattttaggtAATATTTTACTTGGTGGAGAGAATAAGGGCAACAATAAGCCCGTACAGCCCCAACACTTCAGCGAAGATCAGAATGAGGATCATGCCCACAAAGAGGCGAGGCTGCTGGGCTGTGCCCCTGACTCCTGCATCTCCCACAATACCAATGGCAAAGCCAGCAGCAAGGCCACTCAGGCCCACACTCAGTCCTGCACCCAGGTGAAGAAAGCTCTTGTAGAGCGTAACCTTTTCTGAAATGTTGTTTGCAATGAGCACAGCCACCACCAAGCCGTAGATGGCTATGATACCCGCCATGACTACGGGGATGATGGACTTCATGATGAGCTCCGGCCTCATCACTGACATGGCAGCAATGCCTGTGCCACTCTTCGCTGTGCCATAGGCAGCACCCAATGCTGAAGACCATCGCTGCTGAGGCGCCCATCACCGCAAAGAAGGGGGAGTACTCGGGGCTTTCGGCGGACATTCTCCTGCTCGTTCAGGACACCGTACAGACCAACCACacggatagagagagaggggaggcgAAGGGCTCAAATGTCCTCCTAGTTGCTGATGCTGTGTCTATGTTGTTTAAGGCTGCGACTCGTCCACAGTGCCGCTGGCGTTAAAAGAGTCCAGGCTGCGAGTGCGGGAGTCGGTCACGAAGCGCAGAGACCCGGCGGAGATCTGGAAAAA

Function

symbol description
atp6v0c Enables ubiquitin protein ligase binding activity. Involved in positive regulation of Wnt signaling pathway. Located in extracellular exosome; focal adhesion; and lysosomal membrane. Implicated in thyroid gland carcinoma.

NR:

description
Vacuolar ATP synthase 16 kDa proteolipid subunit

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10649 True 1685 lncRNA 0.43 3 4090501 4095000
TU10650 False 1124 lncRNA 0.48 4 4071830 4095000

Neighbor

gene id symbol gene type direction distance location
mapk8ip3 NA coding upstream 15343 3991980 ~ 4056487 (+)
jpt2 hn1l coding upstream 81876 3981473 ~ 3989954 (+)
tmem11 tmem11,LOC107568541,LOC107661149,LOC107552488 coding upstream 134610 3933164 ~ 3937220 (+)
phospho1 phospho1,LOC107745765,LOC107661127,LOC107576079,LOC107755127,LOC107689057 coding upstream 153152 3913539 ~ 3918678 (+)
znf652 znf652,LOC108258819,LOC107754472,LOC107661072,LOC107745758 coding upstream 167081 3880530 ~ 3904749 (+)
trnac-gca_1 NA coding downstream 51636 4146636 ~ 4146707 (+)
trnac-gca_2 NA coding downstream 53587 4148587 ~ 4148658 (+)
trnac-gca_3 NA coding downstream 56041 4151041 ~ 4151112 (+)
trnac-gca_4 NA coding downstream 56331 4151331 ~ 4151402 (+)
rpl19 rpl19,LOC103032189,LOC108413899,LOC107084780,LOC105890759,LOC101075516,LOC107378566,LOC107567432 coding downstream 149176 4244176 ~ 4250400 (+)
G7812 mrps34,LOC107567325 non-coding upstream 2738 4067154 ~ 4069092 (+)
G7785 NA non-coding upstream 8534 4056858 ~ 4063296 (+)
G7795 NA non-coding upstream 117121 3953730 ~ 3954709 (+)
G7789 NA non-coding upstream 127771 3941831 ~ 3944059 (+)
G7772 NA non-coding upstream 215584 3855203 ~ 3856246 (+)
G7819 NA non-coding downstream 6084 4101084 ~ 4101533 (+)
G7821 NA non-coding downstream 13636 4108636 ~ 4113617 (+)
G7808 NA non-coding downstream 19128 4114128 ~ 4114645 (+)
G7847 NA non-coding downstream 255841 4350841 ~ 4351202 (+)
G7942 NA non-coding downstream 265795 4360795 ~ 4361018 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 142588 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 619164 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 1229616 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 1513486 2530616 ~ 2558344 (+)
carm1 carm1 other upstream 1991289 2050283 ~ 2080541 (+)
atp6v0a1 atp6v0a1,LOC108444241 other downstream 657796 4752796 ~ 4802501 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 1090534 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 1237065 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 1633922 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 2262402 6357402 ~ 6376704 (+)

Expression


Co-expression Network