G8088


Basic Information

Item Value
gene id G8088
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 4914464 ~ 4914910 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11048
gtggactttcagcgcacaacagggcacaaataagtaaagctaagcgctttcttttgcaaggcgttgtgttgaagcgagagtttgtacgcaaagaaagctccgcctacgggctgcgtttagacgtgcagtgtaagctcccccgtcgcagcaggtcagtcggaccgtacagtgtgtgcagatgaatcgcaggcgttgttcatacacgacaaacgattcaaacgtgctgtttgagctctccagaacgcatccgattaaaaaaatcgcacagtgtccgcctggcttaaatcacttgggtcctactttctctcgttccatatcaatgcgcgcagcgctgcaacctgacagctagcctacgtgtttgggtcgctttgtttacttctcgcttgttgacgcgtgcgcagctcgctgtcagaatgacgcgcactgatacgaaatgagagaaagtag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11048 True 447 lncRNA 0.51 1 4914464 4914910

Neighbor

gene id symbol gene type direction distance location
stat3 stat3,LOC107653351,LOC107731003,LOC107754129 coding upstream 6303 4854378 ~ 4908161 (+)
cavin1 NA coding upstream 77449 4806334 ~ 4837015 (+)
LOC103021349 LOC103021349,LOC108444243 coding upstream 182140 4705449 ~ 4732324 (+)
LOC103021882 LOC108412577 coding upstream 268338 4639227 ~ 4646126 (+)
LOC103023220 LOC108412582 coding upstream 276226 4635868 ~ 4638238 (+)
LOC103033010 sta5b,stat5,LOC108444239,LOC106607295,LOC108279147 coding downstream 4563 4919473 ~ 5082727 (+)
kcnh4 kcnh4,LOC107568301 coding downstream 427723 5342633 ~ 5408162 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding downstream 507268 5422178 ~ 5450200 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding downstream 537342 5452252 ~ 5467730 (+)
dhx58 NA coding downstream 559904 5474814 ~ 5500346 (+)
G8083 NA non-coding upstream 61398 4852867 ~ 4853066 (+)
G7992 NA non-coding upstream 250099 4664114 ~ 4664365 (+)
G7972 NA non-coding upstream 411900 4501524 ~ 4502564 (+)
G7969 NA non-coding upstream 425266 4487180 ~ 4489198 (+)
LOC111194157 NA non-coding upstream 506666 4402968 ~ 4407798 (+)
G8133 NA non-coding downstream 174718 5089628 ~ 5108793 (+)
G8134 NA non-coding downstream 179051 5093961 ~ 5101259 (+)
G8141 NA non-coding downstream 203138 5118048 ~ 5125168 (+)
G8155 NA non-coding downstream 228090 5143000 ~ 5143355 (+)
G8157 NA non-coding downstream 231460 5146370 ~ 5152507 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 111963 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 985222 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 1461798 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 2072250 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 2356120 2530616 ~ 2558344 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other downstream 270624 5185534 ~ 5328867 (+)
hcrt hcrt other downstream 417155 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 814012 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 1442492 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 1794175 6709085 ~ 6734703 (+)

Expression


Co-expression Network