LOC103045997 (si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565)


Basic Information

Item Value
gene id LOC103045997
gene name si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 5185534 ~ 5328867 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11150
AAGATATTTTGGTAATGTAAAGCCacactactgtaaataaatcatcatataaaagttaatttagtccttttatttagtgtatttttcaaaaatgtttgatGTCACGTTTCTAGTACTTAATTCTAGAAACCTTTTGTAGATGCATTCTTGCTGTCTGTTCTCAGATGACTGCAAGTTTGTTCTTGCACACTGAAACACATAAAAGGAATGCAAGTCCATTTCTCCTGTGTTTGGTCTTTGGTCTTAAATCCTGCTTTCATGTTTTATCCAAGTCCTAACAGCAGTACAATCGTATAACTTAAACTATGCTATAACATACAGTAAACTTATTGCTATTCATTATAGACTAATGCAGGGTTTTAGTTGGCTGCCAATGTCTATGCTACCCTCTGGCCATGAATACTGAGCCTGTGAAGTAACCTATAACGAATAGCATTGAGTTTAACCTGTTTAAAAGCTTAACACAAATATTGTACACAACCTTAAAGGCAATAACAacacatttccaaaaaaaattatttacaatTGTAGGTGCTAGgtatataaaacatttcaaCCTTTAAAGGTTTTATTAGGGCCTTTCTTTAAACATAATCTTTTCTAAAGAAAAATGATGTGATGTACATAATCAGCCAAAAATAAAGCTGTGTAGGCCAGGACTCCCTCTGAAATCTACAGTATAGTGAAGGCAGAAATATGTCAATGGTAAATAATGCAGTTATGCATAGAAGATAGAACTGATAAAGCGAGCAAGACaagtaataaagaaaatagGTGATTAATAAAGACATCAAGATGTACCTCtttagacacaaacacacacacacacgcacatacacacaggcgtatatataaatatatgtacagtgatgcttgaaagtttgtgaaccctttagaattttctatcaATTGTCTTTATTAGACCTTTACACAGGTCCTAAATgtaaaactgaaagcagaagcatttctgagtggagaagagataaaatattgtgtttaatggaaccagtgtgctgaaatgaCTATTCCAGCTAAGCCTAATGTATTCATTCTAATAACTGGGGTGTCAGGTTACTTTttgcaggagttcttctggccacattaagcgtctttacgtacttaggtcacatgtacagcctctaaaagaggatccggctcagttttactgaacacgagcggctggtggagcaatggagacttcaaaaggggaaactcagagctcagtaagAGCTCAGTAGtttattcatttacagtaaagAAAACTGACACTCGTATATAAGAACTCTCCCACATTATCTGAAGAGCATTTCCCTCAGCtcgctctctctgactgaacataaccagGAATTGGACAATCAGATAAATAAATTTAAGGAAAAGTGTACAGATTGTGTACAAATGGACGAAAATTTAAGATACTCCCCAGGAGTAATGAACTCCAAGAGCAGGGCGTGTAATTGTCGGTGAGGTAACAAAGGACCCCAGGATAACTTCTAAGAAACTGAAGTCCACTATTAGGGGAACACTGAACAACACAGGTGTGCATGGCAGGGTTGCATAGAGAAAACCCCTGCTCTCCAAAAAAGAACAATATTGATCATCAGCAGTTTGCTAAAGATCACGTGGCCAAGCCAGAAAGCTACTGAAAGAATTTATTGAGGACAGATGTGaccaaaatagaactttttggtttaaatgaaaagcattatgtttggagaaaggaaaacatTGCATTCCAGCATATGAACCGTATACCATCtctgaaacatggtggtggtagtatcatggtttggtcCTGTTTGGCTGCACCTGGGCCATGACGGCTTGCCTACGTTGATGGAACAATTAATTCTAAAATATATCAAAGAATTCCGAAGGTAAATGTTAGGTTCTTGTTacctacttttaggacttgttTTAGGAGATGTTTGATGTCTTATTTATGGAGAAATATAGAAGGTTCTAAATGGTTCACAAACTGACAAACactactgtatacacacacaaacacacgaacagacacattcacacAGGACTTTTGTGTGTTCCTTTGGCTCCCCCTGCTGGTCCGGATGATGTTTGGGGGCCTGTGCATATACgtcaggttgttaaaattcctgtttttttctgttttattttacatttgcaCTTTCAAACTTTTATCCAGGGGTACAGTCAGTGAAAGTGAGTGCGTGTGAGTGTCGTCTGTCTTGAAacttttgaagaaaaaaaaaaaaaaaacaagatcacCATAGCGTTTAAACTGGAACTCTTCTGACGTCTTTGTTCTATTTTTGCGATGGACTCAACACGAAGAACTCTGGGAAACCTTTGCTGTCCGTCAAACTCCAAGCGGCACTGAGAATAAGAATAAGCAAATAAACGAGAATCTGTCATTTTAGAACTAATTCAAGGACACTTTACAGTCTAGCTCAGAACACTTTACGTCTGAGAGCGTACGCTGTCTGTGAATGGAGTGACTGTTGtaattactactgttactattgTGGGTAGGtatatatgaattaatattGCAGTTATTTTATAATCATGAGCTGTGCACACACAGTGATATCATGCTGTACGTGTGGTGCGATGGTTGAGAACTCACTGGAAAGGGGAAAGAGGAGATCTGAGGTGAGGAGATGAATTCGGGGAAGAGGGCGGGGGGATATGAAATGGGAAAGAGCAGTAGGTTAGGTGTTGACATCTTCAGAATAACACCTCATTTGATTCCCCTCATTTATAAAGcccataatatatattataaaagtgGAATGGCACTAG
>XM_022672553.1
agagagagaaaaagagagggagtgtatgtgtaagaaagagagagaaagagagggggtgaGAGAACGCGGAGTTTTGTTCACTTTCATCCCCCGGTTGGCAGCAGGACcgtgcgcctctctctctctgtctccccgCTCTCTGTGAGTCTTTCGCCGCATGGATTTTTGATTTCGCCCGCTGCTCTCCTGGAGGGTCTCTCTCCGGCTCGGTTCACATGGGACTTgttgttcctgtttttttctggaacAGAAAAATGTTCGGCTCCAGGGCTCCGTAGCTGAGGGCTCTTCGCCATGGCCGAGCCGGGAGCAGTTTCCGACGCTTTGGCGGCTCCGCTGCTCGAGTTTAGCGCCGAGGCTGCGTCTCCCGGCCGGGATGCGGCTCGGCGGGGCTTCCCGGGCCACGGCGCCGAGGGGCTCTTCTCCAACGGCGGCTGCAGGGAGCTCAGCAGCCCTGCGGTGGGCAGCCGGGGTCGAGACGCGTCCGCCGAAAGGAACCAGCCTAGCGGGAACCCACCCTGCGGGATTATGAAGAACAGTTCCAAGCAGCGGCAGGTGAGGAAGAAGACGGTCTCGTTCAGCTCCATGCCGAGTGACCGCAAGATGAACAGCACCGCCGCCTGCATGGCCTTCATGTTGGAGGGATGTGAGATGAAGAAGGTTCGCTCCAACTCGCGCATGTACAACCGATACTTCCTGCTGGATCCAGACTTGCGCTGGCTCCGCTGGGAGCCCTCCAAAAAGGACTCTGAGAAGGCGAAGCTGGAGATCAAGAGCATCAAAGAGGTGCGGTTAGGGAAGAAGACTCCTGTCCTACGCAGCAACGGCCTGTCGGATCAATTTCCAGAAGAGTGCGCATTCTCAATCATTTACGGAGACAATTACGAGTCCCTGGACTTGGTGGCAAGCACGGCAGATGTGGTCAGCACCTGGGTAATGGGACTGCGCTATTTGGTCTCGTACGGGCGACACATGGTCGGTGTGGTCGAAGCCAGTCAGCCGAGTGTAAGAACGTCCTGGATCGGGTCGGTGTTTGAGCTGGCTGATATCGAGAGGCAGGGACAGATAGACTTGTTCCGTGCCACGCAGATTATCAAGGGACTAAATCCAGGGATGAGGGAGTCCCGCATTGAGCTGAAGTTCAAGGAACTTCAAAAGGCCAGAGATTGCTATGGTGAGGGCATTGACTTGGACACATTCGTAGAGGTGTACTGTGAACTGTGCACAAGGTCCGAAATCTTTTTCCTTCTGGTGCAATTTTCTAGCAACAAGGAGTACCTGGATTCTAAAGACTTGATGCTCTTTGTGGAAGTCGAGCAAGGTGTGGAGGGCGTGACTGAGGAGCTGTGTCGTGACATCGTGCGCAAGTATGAACCGTCAGTGGAAGGCCGAGAACGCGGCTACTTGTCCATTGATGGTTTCACACACTACCTCCTGTCATCCGAGTGCCACATTTTTGATCCACAGCACAAGCGAGTTTGTCAGGATATGACACAGCCCCTGTCTCACTACTACATCAACTCCTCGCACAATGCCTCCCTACTGGAGGACCACTATTGGGGTTCCTCAGACATCAGCAGCTACGTCCGTGCCTTGCGCATGGGCTGTCGTAGCCTGGAAGTAGTGGTGTGGGATGGTCCTGACTGTGAGCCAGTGGTTTACGTAGGCAGCTCAGTGGCATCCCAGCTGGCCTTTTCCAAAGTCCTCGATGTTATTAACCAGTATGCCTTTgagagctctgagtttcctctgaTCCTGTGCCTGGTGACACACTGCAGTGTCCCTCAACAGAGGGTCATGGCCCAGCACATGAAAAAAATCCTGGGGGACAAACTCCACTTAGAACCTCCCAGTCCTGACGAACTCTATCTGCCCTCGCCTGAGAAGCTGAAAGGCAAGATCCTTTTGAAAGGAAAGAGGCTCCCACCAGAGACCCAAGATTCTGAGGGGGAGGTTACTGATGAAGAGGAGGGTCTTGAGATGTCGAGGCGCATGGTTGGTGCAGACGACAAGGACCAGCTCAACGGCATCAGCTGCAAGAGGCTGCGACTTTGCAAGGAATTGTCTGACCTTGTGTCTCTTTGCAAATCTGTCCAGTTCCGAGACTTCGAGTTGTCCAAGAGGGAACAGAAGCACTGGGAAATATGTTCTTTCAATGAggtagatgctaaccgctttgCTAATGAGTACCCTGAGGACTTTGTCTGCTACAACAAGAGGTTTCTGTCACGGGTGTACCCGACACCCATGCGCATCGATGCCAGCAATATGAATCCGCAAGACTTTTGGAAATGTGGTTGTCAGATTGTGGCCATGAATTACCAGACACCAGGGTTGATGATGGACCTCAATCTGGGCTGGTTCAGGCAAAATGGCAACTGCGGTTACGTGCTTCGCCCTTCCATAATGCGCGATGAGGTCTCATACTTCAGTGCCAACGCTCGTGACTCATTACCTGGTGTGTCTGCTCAACTTCTCCACATCAAAGTGATCAGTGGTCAAAACCTGCCAAAACCTCGGGGATCTGCTGCAAAAGGGGATGTAGTTGAGCCTTATATTTATGTGGAGATCCACGGCATCCCTGCGGACTGTGCTGAGCAGCGCACCAAGACCGTATCGCAAAACGGTGACAATCCTATCTTTGATGAGAGCTTCGAGTTTCAGATCAATCTCCCAGAACTGGCGGTCTTGCGTTTCGTGGTCCTAGACGATGACTACATCGGAGATGAATTCATTGGCCAGTATACCATCCCCTTTGAGTGCCTGCAACCTGGATACCGACATGTACCATTGCAATCACTTACAGGGGAGTTCTTGCCTAACACCACGCTGTTTGTTCACGTGGCCATCACGAATAGGCGAGGTGGTGGCAAGGCTCACAAGAGGGGTCTTTCTGTGAGGAAAGGCCGCAAGGCTAGGGAGTACACTTCAACCAAGACCACTGGGATCAAAGTGGTGGATGAACTCTTCAGGGCTTCCACTCAGCCACTAAGAGAGGCGACTGATTTGCGGGAAAATGTGCAGAACGCCATGGTGTCGTTTAAAGAGCTGTGTGGCCTGACCCCGGCGGCTAACATGAAGCAATGTATCCTGACCGTGTCCTCGTGGCTTCTGAACAGCGAGCGCTGCCTGCGGGTCACTGTGGACCTGAGCGAGGCCTATCCCACCATGGAGGCGCAGGGACCTGTTCCAGAGCTGCTGCGCAAAGTCCTCACCGCCTACGACACGATGATCCAGACCAGTCGCACTTTGATTGAGTCGGCAGACAGCGTCTACTGTAAACTCACACAAGCACAGCGAGCAGGGTTGGACTTCCATGAGGACCTGCACCGCATCGGAGCTAAAGAGGGGCTGAAGGGCCGAAAGCTACAGAAAGCCATGGAGAGTTACGCCTGGAACATCACTGTTCTTAAGGGTCAGGCAGACCTGTTGAAGTACGCTAAAGGCGAGGCGATGGACACTCTGAGGCAGATCCAGTGTGCGGCTCACTCCTGCGGCCTGGCCAAGAACGGAGCGTCCACCTCCCCCGCCTCGCCCCTGCTGCCCCCTCACTCACGAGCCCACGGCCCCCTTCTCACCATCCCAGAGACAGAGCCACCTGACACGGAGCCCAGTACACCTCAgtgacacacagacagagacagagagagaaataaagagacagacaaagagagagaaatagagagagagcaggaataAGAATTGGCAAAATAAGAAAAGACTGACCAAGCAGAGGCAGAGAGTGATTTTAACCATTAGAAGCTGAGACTCACTATTCAGATCACtataatacagtttatatttaatgtgGTCCAATTTTGAGACTGTTACAGCTGTTACAGCTGTCAATAACAGTGAGTTTTATGGGTTAAAATACTCCTGGCCTGCACAGCTCTAATCTATGAcctaaaaatacttaaaagaaGGCTGCAATAGGGTAATACACATACAAAACTAATTATTGGGATTAATCTGCCCAAATCAGCATACCTTCAAATGATTTAATGGATGCATAAGTAAATTATAACATGCAGGTCAGGCCTACTTCTCTTATTTTAAAACCAATGTTGCCCCTAAATCCTCTcttaaacaattttaaatgaCAAACAGTGGTATATTTTGAGCTAAATTAAGATATTTTGGTAATGTAAAGCCacactactgtaaataaatcatcatataaaagttaatttagtccttttatttagtgtatttttcaaaaatgtttgatGTCACGTTTCTAGTACTTAATTCTAGAAACCTTTTGTAGATGCATTCTTGCTGTCTGTTCTCAGATGACTGCAAGTTTGTTCTTGCACACTGAAACACATAAAAGGAATGCAAGTCCATTTCTCCTGTGTTTGGTCTTTGGTCTTAAATCCTGCTTTCATGTTTTATCCAAGTCCTAACAGCAGTACAATCGTATAACTTAAACTATGCTATAACATACAGTAAACTTATTGCTATTCATTATAGACTAATGCAGGGTTTTAGTTGGCTGCCAATGTCTATGCTACCCTCTGGCCATGAATACTGAGCCTGTGAAGTAACCTATAACGAATAGCATTGAGTTTAACCTGTTTAAAAGCTTAACACAAATATTGTACACAACCTTAAAGGCAATAACAacacatttccaaaaaaaa

Function

symbol description
si:ch211-210g13.5 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in phosphatidylinositol-mediated signaling. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process.

NR:

description
PREDICTED: inactive phospholipase C-like protein 2

GO: NA

KEGG:

id description
K15375 PLCL1, PRIP; inactive phospholipase C-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU11150 False 2787 lncRNA 0.38 2 5326059 5328867
XM_022672553.1 True 4646 mRNA 0.50 6 5185534 5326573

Neighbor

gene id symbol gene type direction distance location
LOC103033010 sta5b,stat5,LOC108444239,LOC106607295,LOC108279147 coding upstream 102807 4919473 ~ 5082727 (+)
stat3 stat3,LOC107653351,LOC107731003,LOC107754129 coding upstream 277373 4854378 ~ 4908161 (+)
cavin1 NA coding upstream 348519 4806334 ~ 4837015 (+)
LOC103021349 LOC103021349,LOC108444243 coding upstream 453210 4705449 ~ 4732324 (+)
LOC103021882 LOC108412577 coding upstream 539408 4639227 ~ 4646126 (+)
kcnh4 kcnh4,LOC107568301 coding downstream 13766 5342633 ~ 5408162 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding downstream 93311 5422178 ~ 5450200 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding downstream 123385 5452252 ~ 5467730 (+)
dhx58 NA coding downstream 145947 5474814 ~ 5500346 (+)
znf385c znf385c,LOC107590592 coding downstream 211074 5539941 ~ 5686852 (+)
G8157 NA non-coding upstream 33027 5146370 ~ 5152507 (+)
G8155 NA non-coding upstream 42179 5143000 ~ 5143355 (+)
G8141 NA non-coding upstream 60366 5118048 ~ 5125168 (+)
G8133 NA non-coding upstream 76741 5089628 ~ 5108793 (+)
G8134 NA non-coding upstream 84275 5093961 ~ 5101259 (+)
LOC111193166 NA non-coding downstream 4016 5332883 ~ 5333994 (+)
G8181 NA non-coding downstream 82973 5411840 ~ 5412408 (+)
G8250 NA non-coding downstream 272755 5601622 ~ 5642847 (+)
G8263 nkiras2,kbrs2,LOC106607286 non-coding downstream 374498 5703365 ~ 5705039 (+)
G8291 NA non-coding downstream 576553 5905420 ~ 5905619 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 383033 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 1256292 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 1732868 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 2343320 2825128 ~ 2842214 (+)
G7296 sept9,LOC108411966 other upstream 2627190 2530616 ~ 2558344 (+)
hcrt hcrt other downstream 3198 5332065 ~ 5339089 (+)
G8287 ttc25,LOC106601019 other downstream 400055 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 1028535 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 1380218 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 3109919 8438786 ~ 8441829 (+)

Expression


Co-expression Network