hcrt (hcrt)


Basic Information

Item Value
gene id hcrt
gene name hcrt
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 5332065 ~ 5339089 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11173
ctgctgaagccAGCGGAGTTTTCTAAAACTCGTCACCTCTGCAACTGTCTTGGCCCTGTTTCCACCGGCTGCTAATTATGTCAATGACTTGGAACTTGCTAATTCTAAAAGGTATGCGCTAACGAAGCCGGGCCTGAGTGGATACAATACTGCTCCAGGACTGACTGTGCATGAAACTCCTTGGATACATCCACCTGAGCAAGCCACGCCAGTTACCGCATGAATGAGTGACGCTGCTAACGAACTGGAGGGTCTAACATACTATCACACTCTGGCTCTCAAAAGAGCTGCATCATAACAAAAGAAGCAGGACAGAATACGAGGGCCAGGCTTTGTTTTTCCATCAATGGAGGCTTTAGCAGAGGGTCTGTATATAAAGGGTTGGTGTGTCTCATGCAGAGTGAACAGAGTTCGAAGTCTTAATCTAGAATGACAGGTGATCACACCAAGCCCAGCGGAGCAGCCGGACACATGGCCATCTCCTCAGCCAAGGTTTTGCTCTTCCTGGCGCTGCTGGCGCAGGTGTGCTGCATGGCGGAAGGCGTGTCCGCGTGCTGTGTGCGGAGGCCTCGTGCGTGCGGTCTGTACGGGGTGCGGTGTAACAGCACGGACTCTAAACCGGTTCGGGTGAGCAGTGGCGCCGCTGTGGGCATCCTCACACTGGGCAAACGGAGAACAGCCGGCAACCGTTACCAAGACCGCCTACAGCACCTGCTGCACGGCACCCGCAACCAGGCCGCCGGTATCCTCACCATGGGCAAGAGGCACGAGGAGGGCGGGGCGCACCCTCAGCCGGGAGTCAGCACTGTGCACTCACTCATTAAACTGGACCTGGAGAAACCTGTGCAGtacctgctgcagcagcagcatacTGACACCAGAGACCCTTATAGACCATGATTTACCTTACAGAGAGAAGCAAGCTCCACCTGCTAAGTAATAAATCAACTCGTTTTTATCagcaaaatctaaaataatgtttatttttgttaattgtgTGCTTCTAAATTAAGATGTGATATAAGACAATATAAGAAAAAGGTTCTTGTAGAGAAATTAGTGGAATATTGATTTGCTTACAGTGGTTGTGAATTGAACTGGAGGCAGTGTTTGGCTGTGTTTCAAAGACTAGGCTGAAGTCAAGAAAGGTGGGTCGTCTCCTGTAGAACTGTCCTGTAAAGATTTCATGACGATATTATGAACACTAGATATGTCCAGTCTATTGCAGTTGTGGTGCAAaactcttttttgttgttgtttttgcacagaatgtattattttaaaacttatgataaaaaaaatctgctacCCTGTAATTTTAGGAACCTGGTTACCTTACAATAAATGCAACTTTATGTTTATAATTCATGTGCACTGTAATTAaacaaaagtttaataaaatatggaCATAAAGCCCTGGCTAAGACAATTGTGAGTAACAAAGGTCCAAACATAAGTTGCATTCATGAATACAAAGGTTTCTTAAAGGCTGACAGAGATAGTTTGTTTGCTATCTGTAGCCACCAGTGAAACCTTTTATGAGTTCTGaggtttatatacagctctggaataaaagataga
>XM_007287820.3
ATCAGTATTTGTGAAGACAGCACTGCGTGATTTACTCATTACCACCAAATGCTCTCTGACCTTCTCTCCAACACAAAGGCATCCTGTTCTACATCCTCATTAGCCTTTATCTCCTCCACAGCTGTGCTGACTCCTAGCCCTTTTGTCTGCTCTTCATCCCTCAGTCTTGGCCCTGTTTCCACCGGCTGCTAATTATGTCAATGACTTGGAACTTGCTAATTCTAAAAGGTATGCGCTAACGAAGCCGGGCCTGAGTGGATACAATACTGCTCCAGGACTGACTGTGCATGAAACTCCTTGGATACATCCACCTGAGCAAGCCACGCCAGTTACCGCATGAATGAGTGACGCTGCTAACGAACTGGAGGGTCTAACATACTATCACACTCTGGCTCTCAAAAGAGCTGCATCATAACAAAAGAAGCAGGACAGAATACGAGGGCCAGGCTTTGTTTTTCCATCAATGGAGGCTTTAGCAGAGGGTCTGTATATAAAGGGTTGGTGTGTCTCATGCAGAGTGAACAGAGTTCGAAGTCTTAATCTAGAATGACAGGTGATCACACCAAGCCCAGCGGAGCAGCCGGACACATGGCCATCTCCTCAGCCAAGGTTTTGCTCTTCCTGGCGCTGCTGGCGCAGGTGTGCTGCATGGCGGAAGGCGTGTCCGCGTGCTGTGTGCGGAGGCCTCGTGCGTGCGGTCTGTACGGGGTGCGGTGTAACAGCACGGACTCTAAACCGGTTCGGGTGAGCAGTGGCGCCGCTGTGGGCATCCTCACACTGGGCAAACGGAGAACAGCCGGCAACCGTTACCAAGACCGCCTACAGCACCTGCTGCACGGCACCCGCAACCAGGCCGCCGGTATCCTCACCATGGGCAAGAGGCACGAGGAGGGCGGGGCGCACCCTCAGCCGGGAGTCAGCACTGTGCACTCACTCATTAAACTGGACCTGGAGAAACCTGTGCAGtacctgctgcagcagcagcatacTGACACCAGAGACCCTTATAGACCATGATTTACCTTACAGAGAGAAGCAAGCTCCACCTGCTAAGTAATAAATCAACTCGTTTTTATCagcaaaatctaaaataatgtttatttttgttaattgtgTGCTTCTAAATTAAGATGTGATATAAGACAATATAAGAAAAAGGTTCTTGTAGAGAAATTAGTGGAATATTGATTTGCTTACAGTGGTTGTGAATTGAACTGGAGGCAGTGTTTGGCTGTGTTTCAAAGACTAGGCTGAAGTCAAGAAAGGTGGGTCGTCTCCTGTAGAACTGTCCTGTAAAGATTTCATGACGATATTATGAACACTAGATATGTCCAGTCTATTGCAGTTGTGGTGCAAaactcttttttgttgttgtttttgcacagaatgtattattttaaaacttatgataaaaaaaatctgctacCCTGTAATTTTAGGAACCTGGTTACCTTACAATAAATGCAACTTTATGTTTATAATTCATGTGCACTGTAATTAaacaaaagtttaataaaatatggaCATAAAGCCCTGGCTAAGACAATTGTGAGTAACAAAGGTCCAAACATAAGTTGCATTCATGAATACAAAGGTTTCTTAAAGGCTGACAGAGATAGTTTGTTTGCTATCTGTAGCCACCAGTGAAACCTTTTATGAGTTCTGaggtttatatacagctctggaataaaagatagaccacttaaaaatgtttttttgattttaccaatttgaaaatc

Function

symbol description
hcrt Predicted to enable neuropeptide hormone activity; type 1 hypocretin receptor binding activity; and type 2 hypocretin receptor binding activity. Acts upstream of or within several processes, including circadian sleep/wake cycle, wakefulness; multicellular organismal response to stress; and sleep. Predicted to be located in endoplasmic reticulum. Predicted to be active in perinuclear region of cytoplasm. Is expressed in brain; female organism; hypocretin-secreting neurons; male organism; and spinal cord. Human ortholog(s) of this gene implicated in narcolepsy. Orthologous to human HCRT (hypocretin neuropeptide precursor).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042746 circadian sleep/wake cycle, wakefulness biological_process
GO:0042594 response to starvation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11173 False 1581 TUCP 0.48 3 5332065 5339048
XM_007287820.3 True 1739 mRNA 0.45 2 5336568 5339089

Neighbor

gene id symbol gene type direction distance location
LOC103033010 sta5b,stat5,LOC108444239,LOC106607295,LOC108279147 coding upstream 249338 4919473 ~ 5082727 (+)
stat3 stat3,LOC107653351,LOC107731003,LOC107754129 coding upstream 423904 4854378 ~ 4908161 (+)
cavin1 NA coding upstream 495050 4806334 ~ 4837015 (+)
LOC103021349 LOC103021349,LOC108444243 coding upstream 599741 4705449 ~ 4732324 (+)
LOC103021882 LOC108412577 coding upstream 685939 4639227 ~ 4646126 (+)
kcnh4 kcnh4,LOC107568301 coding downstream 3544 5342633 ~ 5408162 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding downstream 83089 5422178 ~ 5450200 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding downstream 113163 5452252 ~ 5467730 (+)
dhx58 NA coding downstream 135725 5474814 ~ 5500346 (+)
znf385c znf385c,LOC107590592 coding downstream 200852 5539941 ~ 5686852 (+)
G8157 NA non-coding upstream 179558 5146370 ~ 5152507 (+)
G8155 NA non-coding upstream 188710 5143000 ~ 5143355 (+)
G8141 NA non-coding upstream 206897 5118048 ~ 5125168 (+)
G8133 NA non-coding upstream 223272 5089628 ~ 5108793 (+)
G8181 NA non-coding downstream 72751 5411840 ~ 5412408 (+)
G8250 NA non-coding downstream 262533 5601622 ~ 5642847 (+)
G8263 nkiras2,kbrs2,LOC106607286 non-coding downstream 364276 5703365 ~ 5705039 (+)
G8291 NA non-coding downstream 566331 5905420 ~ 5905619 (+)
G8292 NA non-coding downstream 571181 5910270 ~ 5910650 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 3198 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 529564 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 1402823 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 1879399 3449221 ~ 3452666 (+)
LOC111193069 dlx4a,LOC108432421,LOC107688148,LOC107590410,LOC107689696,LOC107753083 other upstream 2489851 2825128 ~ 2842214 (+)
G8287 ttc25,LOC106601019 other downstream 389833 5728922 ~ 5729500 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 1018313 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 1369996 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 3099697 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 3125027 8464116 ~ 8485936 (+)

Expression


Co-expression Network