G8287 (ttc25,LOC106601019)


Basic Information

Item Value
gene id G8287
gene name ttc25,LOC106601019
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 5728922 ~ 5729500 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11320
CCTACCAAACAGGCTAAAGCAGCCTAGTTTACTAACCTACCTCAGTCAGTCATTTAGCCCCGTTTAGCTGCATTTCAGCTAAAATGTCCGATAACGAGGGAGAACAGGGTCCTAAAAGCACGTTTTCTATCTATATAGCTGAGGGAGAGCAGCTGTTCAACAAAAGAGAATACACTAAAGCCATCCAGAGCTACTCTACGgCTCTGACATTACAGCCTGAGGACAAGAACTGCTTGGTTGCCAGATCTAAGTGTTATGTGAAATTGGGGGATTCTGAAAATGCACTGAAAGATGCTGAGGCTTCTCTCAAAGAGGATAAGAAATTTTTCAAGGTGCTATTTTCAGAAAGAAAAGTACACTCacactaccggtcaaaagttttacaattaaaaaaaa

Function

symbol description
ttc25 tetratricopeptide repeat protein 25

NR:

description
PREDICTED: tetratricopeptide repeat protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11320 True 396 TUCP 0.48 2 5728922 5729500

Neighbor

gene id symbol gene type direction distance location
dnajc7 dnajc7,LOC107690290,LOC107687006,LOC107755572 coding upstream 1301 5706208 ~ 5727621 (+)
znf385c znf385c,LOC107590592 coding upstream 42070 5539941 ~ 5686852 (+)
dhx58 NA coding upstream 228576 5474814 ~ 5500346 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding upstream 261192 5452252 ~ 5467730 (+)
rab5c rab5c,LOC107690295,LOC104958098 coding upstream 278722 5422178 ~ 5450200 (+)
LOC111193176 LOC108259092,LOC107687002 coding downstream 165657 5895157 ~ 5897909 (+)
nudt9 nudt9,LOC107690277,LOC107755585,LOC107729190,LOC107686995 coding downstream 315412 6044912 ~ 6052499 (+)
LOC103042622 LOC108432050 coding downstream 413592 6143092 ~ 6271142 (+)
LOC111194160 NA coding downstream 549469 6278969 ~ 6279690 (+)
LOC103042304 plcd3,plcd3a,LOC108432051,LOC107654535,LOC107581738,LOC107591554 coding downstream 551837 6281337 ~ 6336335 (+)
G8263 nkiras2,kbrs2,LOC106607286 non-coding upstream 23883 5703365 ~ 5705039 (+)
G8250 NA non-coding upstream 86075 5601622 ~ 5642847 (+)
G8181 NA non-coding upstream 316514 5411840 ~ 5412408 (+)
LOC111193166 NA non-coding upstream 394928 5332883 ~ 5333994 (+)
G8157 NA non-coding upstream 576415 5146370 ~ 5152507 (+)
G8291 NA non-coding downstream 175920 5905420 ~ 5905619 (+)
G8292 NA non-coding downstream 180770 5910270 ~ 5910650 (+)
G8304 NA non-coding downstream 222120 5951620 ~ 5958778 (+)
G8309 NA non-coding downstream 235227 5964727 ~ 5966391 (+)
G8320 ehd3,LOC108411040,LOC108260452 non-coding downstream 238675 5968175 ~ 5976450 (+)
hcrt hcrt other upstream 389833 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 400055 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 926421 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 1799680 3924285 ~ 3929242 (+)
G7593 LOC107551170,LOC107729520,LOC107687640,LOC108434904,LOC100304518 other upstream 2276256 3449221 ~ 3452666 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 627902 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 979585 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 2709286 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 2734616 8464116 ~ 8485936 (+)
G9074 NA other downstream 2866369 8595869 ~ 8596783 (+)

Expression


Co-expression Network