G8330


Basic Information

Item Value
gene id G8330
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 5990255 ~ 5991950 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11384
ACCTTtagaatatactgtaaaatgctATATACTActcacaaaaacattttattcacaaacaaaaatgttcagacACAAAACTGAGCTTtcctatatatttaattaagtcTTTAAGTAGAATCAATACGACAACAACAACTAAAACAGAAAGTTCTTCTGTTATTatgaattttatattatatttatattgttaattGTGGTTTGGCTGACATTATTTGTATGCTTGTTCACATCAATACAAACaggaaaataaaccagaatgcAGAAAACTGGGGGTTTCTTTTCATTTGTCCCACCTTGAGTCACATAGTCCCCACTGATGTACTATAAAGCAGTAAAATGCAAACAGTGAACAAACCCTCTCACATAGGTCCTATTTTTCTTATGTAAGGTTGATAAATAATAGATCACAATTGTCTGCAGAACCACAGtacaaataaaaagtataataatgcttttttgtgttgcattaacaggagtgtttttatttttctttattatttctctTAATGAAAAGATTTGTGGAAAACAACATTTGCTGTCATTTGCACTCGTCATAGTTAGACGGCAATTAGATAACGTATAGTCACCCTTGAAATAGAATTTCAATCTGCGCTgcttatttcacattttttaaagtaaaaacaaactGGTGGTTCATGATTATGAAAGTTGTTTGTAATCTTCATAATCAGGTGCTTggtctgccagagtgtctgcgACAGCccactttcattttattttacagcccaacaacaGACtgggttgtaaaaaaaaaatgcatctcagttttttttgcatttgattGGACAGATTATACTGGAATGTTTATGCATGTTGACTTTGTTTTGAAGGCTAGGCCACACTGGACTATGTACTCCATGTATTATGAGAATTTGGTAATAAAGGAATGACACTTGCCATCATGGTTGAATTGTTGGCAGTAGAACCTGTTATTTCATCCTGGCTGCAGTCCTGGACGCCCACTAATGTTTTCCCTGCACCTGATCAGCAGATAATCCAGTTCTTCATGAGCTGACAAAGGTACTGTATGTCACAACAGTGCAGGTGCAATACATGACCAGAATATGAAAACACTGGTAGACATCTGTTCtatctatttctttatttctgtaagtCTCTTCTCTGCTGGAAATGCTCTACAACAGATGTTGGATAATCAGTGATGTCAGCTTCTGATGATTAAAGATTGGTTTGGAATCAACTGTCCTTCCAACTCATCCCTGTAGAATTGAATGGAGCTTTATTATCCTGTTCTACCATTCcaCTGCTCAATACAGCATTAAACCCGACTTGCCTATATGGGTGGGGTTGGGAATGGTGGCCATatactagaggtgggcgataccagGAATTTTGGTATTGATCCGATACCAAATAAATACAGGGCCAGTGCTGCTGATAtcgataccgatacttttttatatttaagctaAGCTTTATAGATTCAAAGGATCCAAAAGATCTAGGATAGAACTAtagtaacagttgtttttaacacactttgcaaaaaaattataaaattatatttgtaaaaaagtactttagaagtatattaaattacattaactaaatgtgtactttatagtagtctattttgT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11384 True 1622 lncRNA 0.34 2 5990255 5991950

Neighbor

gene id symbol gene type direction distance location
LOC111193176 LOC108259092,LOC107687002 coding upstream 92346 5895157 ~ 5897909 (+)
dnajc7 dnajc7,LOC107690290,LOC107687006,LOC107755572 coding upstream 262634 5706208 ~ 5727621 (+)
znf385c znf385c,LOC107590592 coding upstream 303403 5539941 ~ 5686852 (+)
dhx58 NA coding upstream 489909 5474814 ~ 5500346 (+)
kat2a kat2a,LOC107755568,LOC107690294,LOC107687008 coding upstream 522525 5452252 ~ 5467730 (+)
nudt9 nudt9,LOC107690277,LOC107755585,LOC107729190,LOC107686995 coding downstream 52962 6044912 ~ 6052499 (+)
LOC103042622 LOC108432050 coding downstream 151142 6143092 ~ 6271142 (+)
LOC111194160 NA coding downstream 287019 6278969 ~ 6279690 (+)
LOC103042304 plcd3,plcd3a,LOC108432051,LOC107654535,LOC107581738,LOC107591554 coding downstream 289387 6281337 ~ 6336335 (+)
LOC103044667 LOC103044667,LOC108432054,LOC108432053 coding downstream 391493 6383443 ~ 6394943 (+)
G8320 ehd3,LOC108411040,LOC108260452 non-coding upstream 13805 5968175 ~ 5976450 (+)
G8309 NA non-coding upstream 23864 5964727 ~ 5966391 (+)
G8304 NA non-coding upstream 31477 5951620 ~ 5958778 (+)
G8292 NA non-coding upstream 79605 5910270 ~ 5910650 (+)
G8291 NA non-coding upstream 84636 5905420 ~ 5905619 (+)
G8332 NA non-coding downstream 755 5992705 ~ 5993191 (+)
G8333 NA non-coding downstream 1296 5993246 ~ 5996782 (+)
G8343 NA non-coding downstream 30401 6022351 ~ 6022907 (+)
G8355 NA non-coding downstream 101546 6093496 ~ 6095659 (+)
G8450 NA non-coding downstream 419957 6411907 ~ 6413096 (+)
G8287 ttc25,LOC106601019 other upstream 260755 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 651166 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 661388 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 1187754 4752796 ~ 4802501 (+)
natd1 natd1,LOC107745813,LOC107689058,LOC107661164 other upstream 2061013 3924285 ~ 3929242 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other downstream 365452 6357402 ~ 6376704 (+)
LOC103045148 LOC108432039 other downstream 717135 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 2446836 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 2472166 8464116 ~ 8485936 (+)
G9074 NA other downstream 2603919 8595869 ~ 8596783 (+)

Expression


Co-expression Network