G8501


Basic Information

Item Value
gene id G8501
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 6554540 ~ 6554957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11625
AATGCGAACGTTGAGTTGCATGAAGAAGTGGTCTGAGAGGTGTAGAGGAGTGACAGTTAAagagtcggtgtcacagttacgagtgaagatcaggtctagatgtttgccagctttatgtgttgggggctggggacctgctccagatcgaaagactgcatgagggatgagaagtctgtgaagctggtactgtcatgatggatgttcatatcccctagaatgagcatgggGCAATCTTGCTCggggatagaagacagtagcatgtcaagttcATGTGTGAACtcgcccatttgtccaggaggacggtAGATGACAACGACAGTAAGTTTTGAtggagtattaaccagtgtggcatgatactcGAACGAGTTGTATGAGTTTGCAGGTAATAGTGGAGTGTATTTTAAGCCATTCGCGAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11625 True 418 lncRNA 0.34 1 6554540 6554957

Neighbor

gene id symbol gene type direction distance location
LOC103045761 NA coding upstream 73302 6425294 ~ 6481238 (+)
LOC107196803 NA coding upstream 142710 6401762 ~ 6411830 (+)
LOC103044667 LOC103044667,LOC108432054,LOC108432053 coding upstream 159597 6383443 ~ 6394943 (+)
LOC103042304 plcd3,plcd3a,LOC108432051,LOC107654535,LOC107581738,LOC107591554 coding upstream 218205 6281337 ~ 6336335 (+)
LOC111194160 NA coding upstream 274850 6278969 ~ 6279690 (+)
LOC103043121 NA coding downstream 207023 6761980 ~ 6805840 (+)
mpp3 mpp3 coding downstream 262114 6817071 ~ 6870404 (+)
LOC111193218 NA coding downstream 714172 7269129 ~ 7270384 (+)
LOC103047589 NA coding downstream 1242665 7797622 ~ 7812296 (+)
LOC103042396 NA coding downstream 1343770 7898727 ~ 7906297 (+)
G8499 NA non-coding upstream 1371 6552859 ~ 6553169 (+)
G8451 NA non-coding upstream 139118 6414057 ~ 6415422 (+)
G8450 NA non-coding upstream 141444 6411907 ~ 6413096 (+)
G8355 NA non-coding upstream 458881 6093496 ~ 6095659 (+)
G8343 NA non-coding upstream 531633 6022351 ~ 6022907 (+)
G8509 NA non-coding downstream 76824 6631781 ~ 6634390 (+)
G8556 NA non-coding downstream 253708 6808665 ~ 6808882 (+)
G8570 NA non-coding downstream 327400 6882357 ~ 6882566 (+)
G8571 NA non-coding downstream 330619 6885576 ~ 6885811 (+)
G8572 NA non-coding downstream 333567 6888524 ~ 6888742 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 177836 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 825040 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 1215451 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 1225673 5185534 ~ 5328867 (+)
atp6v0a1 atp6v0a1,LOC108444241 other upstream 1752039 4752796 ~ 4802501 (+)
LOC103045148 LOC108432039 other downstream 154128 6709085 ~ 6734703 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 1883829 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 1909159 8464116 ~ 8485936 (+)
G9074 NA other downstream 2040912 8595869 ~ 8596783 (+)
G9113 NA other downstream 2254744 8809701 ~ 8810467 (+)

Expression


Co-expression Network