G8777 (rps11,LOC107674708,LOC107590366)


Basic Information

Item Value
gene id G8777
gene name rps11,LOC107674708,LOC107590366
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 7894388 ~ 7897929 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11966
aatactgtttGTAATTCCATTCTCACTAGCATACTGATATTTCAAGACCAAACGTAAAACTGAAagcttaaaagaaaaagaaaattttaaCTGCAAAGCTGTCAATTAAACCGCTACTGGCTTCGATTTTTCTTGTCAACAATGATATGCAACAAACggttgtagaaaaaaaatgtttaagtaaaatttaggGTCAGTTTAAAACCCAGTTTTCAGCCATGAATTGGGTGCCAATACTAAAAAGAAGACCACCACCAAGAGCGGATTtactttttccacctttttGCCCCAGCTGTGCATGTACAGATTTATATTAAGTTAGCAGTGTATTGGACCTAAGGGAGTAAAGACTTCCCTTGATGCAAGACTGGATGAAATTGTCAAGTGCagaggtttgttttttttttgagcccaGAACAGCAACAGCAGACAGCTAAAGGCATTTTGTATACCACTGTACAAAACTCCTAATGAAATGTATGTATTTCGATTGTGCTTTTCCCTATGGACACCTAATACATTCATCAAGTAATAACCCCAAACACCAGTATAAATATGGcatgttaaaatagcaaaaacactAAAGTGTGCAAAAGGTGGTACACAACAGTATAGGAGCCACAGGTATAGAACAGAATGACTGACAACTTCACAAATCCacagaacttttatttttgtcttgcaAAGTCAAGTCAGTGGAACCTAGAATTGATCAATTAACTCTAGAACTTCTGGAACTGCTTCTTGGATCCTGCTGCCTTGGTGACCTTCAGGACATTGAACCTCACTGTCTTGCTGAGGGGTCTGCACTCTCCAACAGTGACGATGTCACCCACAGCCATATCCCTagagataaaagaaaaagatattaACTGTTAAGTTGCAAACCCAGGCTAATCTGCCATAGCCAGTCTGTAAGCTACAATACCAGCATCAGAACTCATGAACAGGGATGTTCCATTATAGGTGCTGGATTCCTGCAACTGTGCACTTTGTGCTTGAGCAGAAATTCGTTGTAACTATCCTAGAAGTTGCTAGGTTTAGTGGGAGCCGGAATCAGTAAACTGTGCTGGAATCCAGCTAATCATAATGCCCACCATAATGCATTTTGTACATTACTTAAACTTAACTGAACTTAAGACTTACTAGAACACAACCGCAATGCTAAACACAGCATGACTACAAAAAGTACAACTGAAGAGTACGGCTATTAAAACAACACttaatttgaaagaaaatcTGCATCAGAAATGCCAGTAGGCAATGTCGTCAGAGTCTTCAAGACTTGGAAGACCATCGTGAGAAAAACCATCATATGCAGTTTTCTTGAACCATAAGTAAACCAAAAATCACGTCTACATAAGAATGTATAGAATGGAAAAGAACTTAGATTTTTACCTGAAGCAGGGAGAGATGTGGACAGATAAGTTCTTGTGTCTCTTCTCAAAACGGTTGTACTTGCGAATATAATGCAGGTAGTCACGTCTGATAACGATGGTCCTCTGCATCTTGATCTTGGTCACCACACCTGAAaagttaaatacaaaaaaatgagtGCAGAAgtgaaaaaagtttaaaactgAGTTTATCtacacataaaaagaaaaaaaaaaggtacacaCTCAGAAGTGTggatttactaaaataaaaagaaacacctAGATACTGGAAGCTTCAGCAAAGCCATAAGGCAATGTCGTCAAAACCCCAAGGGTTTGGAAGACCATCGTGAGAAAAAACATCATTTGCAACCCAGCAAAAGGCTCACACACAtctaagacaaaaaaatattttttaaaagcgtaaaataaaaacttaccAGACAGAATGCGGCCTCGGATGGACACGCTGCCAGTAAATGGGCATTTTTTGTCAATGTAAGTGCCTTCAATAGCCTCTGGGGGTTTTGAAGCCCAATCCGACATTTTTGTGGTAACGTGGGAGCTTTTCCTTGGCACCTCCTTCCGGAACCAAAACTCGCTTCCTGTTCTGGAAGACGGTGGGCTGCCTTTGATAGGCCCTCTCGTTCTGCCAAATAGAAAAAACAATTTTCAGTCAATGTTTGCCATTAATGCCATTAGCATTTACCACTAGCTGTGGGACTGCATCAGTGTAGCCTTGTAGGCACTGTCGTCAAAGCAACAAGAGCTTGGAAGACCATCGTGAGAAAATACATCACATGCAGCTACATTCTTACAAATCAAAGCCCACTTATGTTATCTTCAACACTTAGCAATAAATGACTTCCTAGACAAAAAGTTAGATCATAGATCTCCTGACAGTCTAAAAGTATCCGTATAAAAAAT
>TU11968
aatactgtttGTAATTCCATTCTCACTAGCATACTGATATTTCAAGACCAAACGTAAAACTGAAagcttaaaagaaaaagaaaattttaaCTGCAAAGCTGTCAATTAAACCGCTACTGGCTTCGATTTTTCTTGTCAACAATGATATGCAACAAACggttgtagaaaaaaaatgtttaagtaaaatttaggGTCAGTTTAAAACCCAGTTTTCAGCCATGAATTGGGTGCCAATACTAAAAAGAAGACCACCACCAAGAGCGGATTtactttttccacctttttGCCCCAGCTGTGCATGTACAGATTTATATTAAGTTAGCAGTGTATTGGACCTAAGGGAGTAAAGACTTCCCTTGATGCAAGACTGGATGAAATTGTCAAGTGCagaggtttgttttttttttgagcccaGAACAGCAACAGCAGACAGCTAAAGGCATTTTGTATACCACTGTACAAAACTCCTAATGAAATGTATGTATTTCGATTGTGCTTTTCCCTATGGACACCTAATACATTCATCAAGTAATAACCCCAAACACCAGTATAAATATGGcatgttaaaatagcaaaaacactAAAGTGTGCAAAAGGTGGTACACAACAGTATAGGAGCCACAGGTATAGAACAGAATGACTGACAACTTCACAAATCCacagaacttttatttttgtcttgcaAAGTCAAGTCAGTGGAACCTAGAATTGATCAATTAACTCTAGAACTTCTGGAACTGCTTCTTGGATCCTGCTGCCTTGGTGACCTTCAGGACATTGAACCTCACTGTCTTGCTGAGGGGTCTGCACTCTCCAACAGTGACGATGTCACCCACAGCCATATCCCGAAGCAGGGAGAGATGTGGACAGATAAGTTCTTGTGTCTCTTCTCAAAACGGTTGTACTTGCGAATATAATGCAGGTAGTCACGTCTGATAACGATGGTCCTCTGCATCTTGATCTTGGTCACCACACcAGACAGAATGCGGCCTCGGATGGACACGCTGCCAGTAAATGGGCATTTTTTGTCAATGTAAGTGCCTTCAATAGCCTCTCTGGGGGTTTTGAAGCCCAATCCGACATTTTTGTGGTAACGTGGGAGCTTTTCCTTGGCACCTCCTTCCGGAACCAAAACTCGCTTCCTGTTCTGGAAGACGGTGGGCTGCCTTTGATAGGCCCTCTCGTTCAATAAATGACTTCCTAGACAAAAAGTTAGATCATAGATCTCCTGACAGTCTAAAAGTATCCGTATAAAAAAT
>TU11970
aatactgtttGTAATTCCATTCTCACTAGCATACTGATATTTCAAGACCAAACGTAAAACTGAAagcttaaaagaaaaagaaaattttaaCTGCAAAGCTGTCAATTAAACCGCTACTGGCTTCGATTTTTCTTGTCAACAATGATATGCAACAAACggttgtagaaaaaaaatgtttaagtaaaatttaggGTCAGTTTAAAACCCAGTTTTCAGCCATGAATTGGGTGCCAATACTAAAAAGAAGACCACCACCAAGAGCGGATTtactttttccacctttttGCCCCAGCTGTGCATGTACAGATTTATATTAAGTTAGCAGTGTATTGGACCTAAGGGAGTAAAGACTTCCCTTGATGCAAGACTGGATGAAATTGTCAAGTGCagaggtttgttttttttttgagcccaGAACAGCAACAGCAGACAGCTAAAGGCATTTTGTATACCACTGTACAAAACTCCTAATGAAATGTATGTATTTCGATTGTGCTTTTCCCTATGGACACCTAATACATTCATCAAGTAATAACCCCAAACACCAGTATAAATATGGcatgttaaaatagcaaaaacactAAAGTGTGCAAAAGGTGGTACACAACAGTATAGGAGCCACAGGTATAGAACAGAATGACTGACAACTTCACAAATCCacagaacttttatttttgtcttgcaAAGTCAAGTCAGTGGAACCTAGAATTGATCAATTAACTCTAGAACTTCTGGAACTGCTTCTTGGATCCTGCTGCCTTGGTGACCTTCAGGACATTGAACCTCACTGTCTTGCTGAGGGGTCTGCACTCTCCAACAGTGACGATGTCACCCACAGCCATATCCCTAAGCAGGGAGAGATGTGGACAGATAAGTTCTTGTGTCTCTTCTCAAAACGGTTGTACTTGCGAATATAATGCAGGTAGTCACGTCTGATAACGATGGTCCTCTGCATCTTGATCTTGGTCACCACAcAGACAGAATGCGGCCTCGGATGGACACGCTGCCAGTAAATGGGCATTTTTTGTCAATGTAAGTGCCTTCAATAGCCTCTCTGGGGGTTTTGAAGCCCAATCCGACATTTTTGTGGTAACGTGGGAGCTTTTCCTTGGCACCTCCTTCCGGAACCAAAACTCGCTTCCTGTTCTGGAAGACGGTGGGCTGCCTTTGATAGGCCCTCTCGTTCTGAACATCCGACATCTTGCCAGGCGAGTCGTAAAGAGGACTACGCATGCGCGAAGCAGCGGGAAGAGCATCCTGGACCGGATGTGGCGTAAGGCAAAGGCGGTACTT
>TU11972
aatactgtttGTAATTCCATTCTCACTAGCATACTGATATTTCAAGACCAAACGTAAAACTGAAagcttaaaagaaaaagaaaattttaaCTGCAAAGCTGTCAATTAAACCGCTACTGGCTTCGATTTTTCTTGTCAACAATGATATGCAACAAACggttgtagaaaaaaaatgtttaagtaaaatttaggGTCAGTTTAAAACCCAGTTTTCAGCCATGAATTGGGTGCCAATACTAAAAAGAAGACCACCACCAAGAGCGGATTtactttttccacctttttGCCCCAGCTGTGCATGTACAGATTTATATTAAGTTAGCAGTGTATTGGACCTAAGGGAGTAAAGACTTCCCTTGATGCAAGACTGGATGAAATTGTCAAGTGCagaggtttgttttttttttgagcccaGAACAGCAACAGCAGACAGCTAAAGGCATTTTGTATACCACTGTACAAAACTCCTAATGAAATGTATGTATTTCGATTGTGCTTTTCCCTATGGACACCTAATACATTCATCAAGTAATAACCCCAAACACCAGTATAAATATGGcatgttaaaatagcaaaaacactAAAGTGTGCAAAAGGTGGTACACAACAGTATAGGAGCCACAGGTATAGAACAGAATGACTGACAACTTCACAAATCCacagaacttttatttttgtcttgcaAAGTCAAGTCAGTGGAACCTAGAATTGATCAATTAACTCTAGAACTTCTGGAACTGCTTCTTGGATCCTGCTGCCTTGGTGACCTTCAGGACATTGAACCTCACTGTCTTGCTGAGGGGTCTGCACTCTCCAACAGTGACGATGTCACCCACAGCCATATCCCGAAGCAGGGAGAGATGTGGACAGATAAGTTCTTGTGTCTCTTCTCAAAACGGTTGTACTTGCGAATATAATGCAGGTAGTCACGTCTGATAACGATGGTCCTCTGCATCTTGATCTTGGTCACCACACCTGAAGAATGCGGCCTCGGATGGACACGCTGCCAGTAAATGGGCATTTTTTGTCAATGTAAGTGCCTTCAATAGCCTCTGGGGGTTTTGAAGCCCAATCCGACATTTTTGTGGTAACGTGGGAGCTTTTCCTTGGCACCTCCTTCCGGAACCAAAACTCGCTTCCTGTTCTGGAAGACGGTGGGCTGCCTTTGATAGGCCCTCTCTCCATTAGAAACTCGAAGGTCCTAATCGGGAGATTGTGGCTGTAAAGCCGCGTCAATAGACCCGCCGCTCAGCCTGCGGCCCAGAGCACGCCGAGTTTCCGCTCACTCTCACACAGAAAGGATAAAATACCGTTTAATACACACTCATGGTCTCTAAAGATCCCCCGGTTCGCTCACACACTACCTTACAGACCCTTATATGTCGAATAACTGCACATAAAACCTCACAACCAAGTAAAATTAGCCTTTTATCCCCACCACGCCGCTCCGCTCACCGTACCTGAACATCCGACATCTTGCCAGGCGAGTCGTAAAGAGGACTACGCATGCGCGAAGCAGCGGGAAGAGCATCCTGGACCGGATGTGGCGTAAGGCAAAGGCGGTACTT

Function

symbol description
rps11 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS11 (ribosomal protein S11).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11966 True 2306 lncRNA 0.39 2 7894388 7896904
TU11968 False 1259 lncRNA 0.37 5 7894388 7896904
TU11970 False 1293 lncRNA 0.57 5 7894388 7897929
TU11972 False 1568 lncRNA 0.44 5 7894388 7897929

Neighbor

gene id symbol gene type direction distance location
LOC103047589 NA coding upstream 82092 7797622 ~ 7812296 (+)
LOC111193218 NA coding upstream 624004 7269129 ~ 7270384 (+)
mpp3 mpp3 coding upstream 1023984 6817071 ~ 6870404 (+)
LOC103043121 NA coding upstream 1088548 6761980 ~ 6805840 (+)
LOC103045761 NA coding upstream 1413150 6425294 ~ 6481238 (+)
LOC103042396 NA coding downstream 798 7898727 ~ 7906297 (+)
bax bax coding downstream 15444 7913373 ~ 7922529 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding downstream 66244 7964173 ~ 8020034 (+)
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding downstream 179995 8077924 ~ 8102541 (+)
trnag-acc NA coding downstream 703338 8601267 ~ 8601338 (+)
G8775 NA non-coding upstream 4226 7889475 ~ 7890162 (+)
G8767 NA non-coding upstream 20475 7872535 ~ 7873913 (+)
G8755 NA non-coding upstream 79193 7763617 ~ 7815195 (+)
G8751 NA non-coding upstream 139171 7754435 ~ 7755217 (+)
G8743 NA non-coding upstream 275152 7618186 ~ 7619236 (+)
G8783 NA non-coding downstream 8704 7906633 ~ 7907002 (+)
G8788 NA non-coding downstream 33204 7931133 ~ 7932921 (+)
G8781 NA non-coding downstream 122337 8020266 ~ 8020713 (+)
G8796 gosr2,LOC107721531,LOC106601130,LOC107654523 non-coding downstream 129913 8027842 ~ 8037001 (+)
G8804 NA non-coding downstream 234874 8132803 ~ 8133010 (+)
LOC103045148 LOC108432039 other upstream 1159685 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 1517684 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 2164888 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 2555299 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 2565521 5185534 ~ 5328867 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 540857 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 566187 8464116 ~ 8485936 (+)
G9074 NA other downstream 697940 8595869 ~ 8596783 (+)
G9113 NA other downstream 911772 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 1021900 8919829 ~ 8931005 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G20225 NA non-coding NC_056701.1 CM032070.1 14665914 ~ 14671569 (-)