G8781


Basic Information

Item Value
gene id G8781
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8020266 ~ 8020713 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11978
taagagagcatttaaaaaatgatgaatttctttgattttaccaaattgaaaacctctagaatataatcaagaggaagatggatgatcacaatccatcaaaccaagctgaactgcttgaatttttgcaccaagactaaaggcataaagttatacaaaagcagagtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcttaaaactttaagaacATGAACGTTcttggcattatttgaggtctgaaagctctgcttcttttttgttatttcagccatttctcattttctgcaaataaatgctctaaatgacaatatttgtatttgaaatttgggggaaatttatctgtagtttgtagaataaaacaatgttagttttacttaaacatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11978 True 448 lncRNA 0.38 1 8020266 8020713

Neighbor

gene id symbol gene type direction distance location
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 232 7964173 ~ 8020034 (+)
bax bax coding upstream 97737 7913373 ~ 7922529 (+)
LOC103042396 NA coding upstream 113969 7898727 ~ 7906297 (+)
LOC103047589 NA coding upstream 207970 7797622 ~ 7812296 (+)
LOC111193218 NA coding upstream 749882 7269129 ~ 7270384 (+)
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding downstream 57211 8077924 ~ 8102541 (+)
trnag-acc NA coding downstream 580554 8601267 ~ 8601338 (+)
helz helz,LOC107665819,LOC107691233 coding downstream 583492 8604205 ~ 8684262 (+)
lmtk2 lmtk2 coding downstream 820376 8841089 ~ 8885543 (+)
rai1 NA coding downstream 1611142 9631855 ~ 9720856 (+)
G8788 NA non-coding upstream 87345 7931133 ~ 7932921 (+)
G8783 NA non-coding upstream 113264 7906633 ~ 7907002 (+)
G8777 rps11,LOC107674708,LOC107590366 non-coding upstream 122337 7894388 ~ 7897929 (+)
G8775 NA non-coding upstream 130104 7889475 ~ 7890162 (+)
G8767 NA non-coding upstream 146353 7872535 ~ 7873913 (+)
G8796 gosr2,LOC107721531,LOC106601130,LOC107654523 non-coding downstream 7129 8027842 ~ 8037001 (+)
G8804 NA non-coding downstream 112090 8132803 ~ 8133010 (+)
G8957 NA non-coding downstream 138399 8159112 ~ 8159613 (+)
G8972 NA non-coding downstream 223736 8244449 ~ 8285944 (+)
G8975 NA non-coding downstream 261116 8281829 ~ 8303925 (+)
LOC103045148 LOC108432039 other upstream 1285563 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 1643562 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 2290766 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 2681177 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 2691399 5185534 ~ 5328867 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 418073 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 443403 8464116 ~ 8485936 (+)
G9074 NA other downstream 575156 8595869 ~ 8596783 (+)
G9113 NA other downstream 788988 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 899116 8919829 ~ 8931005 (+)

Expression


Co-expression Network