G8783


Basic Information

Item Value
gene id G8783
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 7906633 ~ 7907002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU11980
ctagccgctctaccccaaatcaatgatagataacgttttttttttataatgaagtgttccgcatgcgctaaaaagtgcccttttccccccctgagcacttgccccccaaaatgtctgtgcacgccactggttaagaaggttttatctctttcttctgtaaagttactgttttggagacagtatgtgtttttcatttgacAGCAAAGatagacacacacatacccacacatcTACATCTTTTAGTCTCTTAGGTTAGTCAGTCAAAAGTAGCACTTTTaacttatttgtttaatttaaacccATAATCTTCTGTCTGTTAAGGTCTTAAAACTCTATCCAACAGTGGGCTCATTTCTTGGGTTGGCAAATT

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
TU11980 True 370 lncRNA 0.39 1 7906633 7907002

Neighbor

gene id symbol gene type direction distance location
LOC103042396 NA coding upstream 336 7898727 ~ 7906297 (+)
LOC103047589 NA coding upstream 94337 7797622 ~ 7812296 (+)
LOC111193218 NA coding upstream 636249 7269129 ~ 7270384 (+)
mpp3 mpp3 coding upstream 1036229 6817071 ~ 6870404 (+)
LOC103043121 NA coding upstream 1100793 6761980 ~ 6805840 (+)
bax bax coding downstream 6371 7913373 ~ 7922529 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding downstream 57171 7964173 ~ 8020034 (+)
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding downstream 170922 8077924 ~ 8102541 (+)
trnag-acc NA coding downstream 694265 8601267 ~ 8601338 (+)
helz helz,LOC107665819,LOC107691233 coding downstream 697203 8604205 ~ 8684262 (+)
G8777 rps11,LOC107674708,LOC107590366 non-coding upstream 8704 7894388 ~ 7897929 (+)
G8775 NA non-coding upstream 16471 7889475 ~ 7890162 (+)
G8767 NA non-coding upstream 32720 7872535 ~ 7873913 (+)
G8755 NA non-coding upstream 91438 7763617 ~ 7815195 (+)
G8751 NA non-coding upstream 151416 7754435 ~ 7755217 (+)
G8788 NA non-coding downstream 24131 7931133 ~ 7932921 (+)
G8781 NA non-coding downstream 113264 8020266 ~ 8020713 (+)
G8796 gosr2,LOC107721531,LOC106601130,LOC107654523 non-coding downstream 120840 8027842 ~ 8037001 (+)
G8804 NA non-coding downstream 225801 8132803 ~ 8133010 (+)
G8957 NA non-coding downstream 252110 8159112 ~ 8159613 (+)
LOC103045148 LOC108432039 other upstream 1171930 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 1529929 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 2177133 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 2567544 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 2577766 5185534 ~ 5328867 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 531784 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 557114 8464116 ~ 8485936 (+)
G9074 NA other downstream 688867 8595869 ~ 8596783 (+)
G9113 NA other downstream 902699 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 1012827 8919829 ~ 8931005 (+)

Expression


Co-expression Network