G8972


Basic Information

Item Value
gene id G8972
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8244449 ~ 8285944 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12198
gttttttttttttttTTACAGCATtcatacttttatttacattctacttcTCTGAGGTGGCCTTACACAGTATACAACAGTGTATAACAGAGCTGTAGGAACGGCTGTTCCTCTGACTGACTGGAGCCGGGGGGAGATGATcgcagctggagcagactttgGGGTCTTTGTGTAAAAAggttaatgcaaaaaaaaaagtccccaTATTGTGTGATATTATACAGAGAGCCAGAGCACAGCCTGTGCTAGGTTATTATACAGCCACCCTTCTCCTTAAACGGGTTCTTATCTTCAGGCACTCCTTTAATGAGAGGATCTTCAGCTGACTGAGTTTcaacaaaatcacacagctCCTTTGCTGTTTTAGATACCTatgaggagagaaaaagagagagaggatcaGTAATCAGATCAATGAGGCATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12198 True 425 lncRNA 0.41 2 8244449 8285944

Neighbor

gene id symbol gene type direction distance location
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 141908 8077924 ~ 8102541 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 224415 7964173 ~ 8020034 (+)
bax bax coding upstream 321920 7913373 ~ 7922529 (+)
LOC103042396 NA coding upstream 338152 7898727 ~ 7906297 (+)
LOC103047589 NA coding upstream 432153 7797622 ~ 7812296 (+)
trnag-acc NA coding downstream 315323 8601267 ~ 8601338 (+)
helz helz,LOC107665819,LOC107691233 coding downstream 318261 8604205 ~ 8684262 (+)
lmtk2 lmtk2 coding downstream 555145 8841089 ~ 8885543 (+)
rai1 NA coding downstream 1345911 9631855 ~ 9720856 (+)
drc3 NA coding downstream 1524995 9810939 ~ 9821052 (+)
G8957 NA non-coding upstream 84836 8159112 ~ 8159613 (+)
G8804 NA non-coding upstream 111439 8132803 ~ 8133010 (+)
G8796 gosr2,LOC107721531,LOC106601130,LOC107654523 non-coding upstream 207448 8027842 ~ 8037001 (+)
G8781 NA non-coding upstream 223736 8020266 ~ 8020713 (+)
G8788 NA non-coding upstream 311528 7931133 ~ 7932921 (+)
G9002 NA non-coding downstream 87346 8373290 ~ 8374141 (+)
G9056 pitpnc1,LOC108412868,LOC108274028,LOC103469328 non-coding downstream 217270 8503214 ~ 8592870 (+)
G9059 NA non-coding downstream 268310 8554254 ~ 8554721 (+)
G9073 NA non-coding downstream 308880 8594824 ~ 8595863 (+)
G9088 NA non-coding downstream 419488 8705432 ~ 8762647 (+)
LOC103045148 LOC108432039 other upstream 1509746 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 1867745 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 2514949 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 2905360 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 2915582 5185534 ~ 5328867 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 152842 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 178172 8464116 ~ 8485936 (+)
G9074 NA other downstream 309925 8595869 ~ 8596783 (+)
G9113 NA other downstream 523757 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 633885 8919829 ~ 8931005 (+)

Expression


Co-expression Network