G9002


Basic Information

Item Value
gene id G9002
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8373290 ~ 8374141 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12240
aaggcgagagagagagagagcggagtacaagagagagagagagaccaatgacaagagtgagagaaagcgctgcaataaaaaaaatggctagtggaagtgatgcacggagacagacaccgattctccttatgaacattttcatcacctggtaagaaacccacaattgcagtgtcatgagcaaatgtctacaatgagcagtttcaaagaacgtatagtgatttctagcttgtagtgtgaaaaaaagtatttatttgaatatctcacgaaaaaagaaaaatgaactgaactttgaactagttcagaattaaaattgtgaactttgaatgtgaactgttcactttgagcatgtatgaactaaacttgaactagttcaaaaagctgtgaactggtaCAACACAGTTgtgttattacatttattgagccacttcacttttTTGCACCCATGTGCGCccatgtcacgtctggtgctgttagctcctctgtcccttccacacccagctctaacggaggttctcaggtcaacaactacattacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctccaggaagtcctgaatactgattactggcactataaaagagcactccacacaaacacccacgctgcgtattgtaggttctcctcattacaaagcgttctatatctcttgtctcagtttatcttgtgtatgaccttgcctttgtcttctcgacgccgattattgcctttgcctctgatattggattgcttgtgtattacctggactgtgttttcactactgcctcttggattacctctgacattggatctctcgt

Function

GO: NA

KEGG:

id description
ko00511 Other glycan degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU12240 True 852 lncRNA 0.42 1 8373290 8374141

Neighbor

gene id symbol gene type direction distance location
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 270749 8077924 ~ 8102541 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 353256 7964173 ~ 8020034 (+)
bax bax coding upstream 450761 7913373 ~ 7922529 (+)
LOC103042396 NA coding upstream 466993 7898727 ~ 7906297 (+)
LOC103047589 NA coding upstream 560994 7797622 ~ 7812296 (+)
trnag-acc NA coding downstream 227126 8601267 ~ 8601338 (+)
helz helz,LOC107665819,LOC107691233 coding downstream 230064 8604205 ~ 8684262 (+)
lmtk2 lmtk2 coding downstream 466948 8841089 ~ 8885543 (+)
rai1 NA coding downstream 1257714 9631855 ~ 9720856 (+)
drc3 NA coding downstream 1436798 9810939 ~ 9821052 (+)
G8975 NA non-coding upstream 69365 8281829 ~ 8303925 (+)
G8972 NA non-coding upstream 87346 8244449 ~ 8285944 (+)
G8957 NA non-coding upstream 213677 8159112 ~ 8159613 (+)
G8804 NA non-coding upstream 240280 8132803 ~ 8133010 (+)
G8796 gosr2,LOC107721531,LOC106601130,LOC107654523 non-coding upstream 336289 8027842 ~ 8037001 (+)
G9056 pitpnc1,LOC108412868,LOC108274028,LOC103469328 non-coding downstream 129073 8503214 ~ 8592870 (+)
G9059 NA non-coding downstream 180113 8554254 ~ 8554721 (+)
G9073 NA non-coding downstream 220683 8594824 ~ 8595863 (+)
G9088 NA non-coding downstream 331291 8705432 ~ 8762647 (+)
G9096 aimp2,LOC107724742,LOC107691232,LOC107548699 non-coding downstream 399363 8773504 ~ 8774905 (+)
LOC103045148 LOC108432039 other upstream 1638587 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 1996586 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 2643790 5728922 ~ 5729500 (+)
hcrt hcrt other upstream 3034201 5332065 ~ 5339089 (+)
LOC103045997 si:ch211-210g13.5,LOC108441607,LOC107729192,LOC107687011,LOC108256246,LOC107755565 other upstream 3044423 5185534 ~ 5328867 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other downstream 64645 8438786 ~ 8441829 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other downstream 89975 8464116 ~ 8485936 (+)
G9074 NA other downstream 221728 8595869 ~ 8596783 (+)
G9113 NA other downstream 435560 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 545688 8919829 ~ 8931005 (+)

Expression


Co-expression Network