G9056 (pitpnc1,LOC108412868,LOC108274028,LOC103469328)


Basic Information

Item Value
gene id G9056
gene name pitpnc1,LOC108412868,LOC108274028,LOC103469328
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8503214 ~ 8592870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12310
CTCTGACTCTTTGTAGTAGCGCTCGGGGATCTCATCATACGCAATGTCGATGAAACACATTTCGGTGTCCTCGTCTCTCGGTTCCCCATCAAAGATATTGTCATTGCTACCATTGTTGTCCTCATACTTTGTCTCTATGTGGATGGAGAACTTTGGCAAGAAAGAGCACGTGTACTCAGTGATGGTGTAAGGATAATAGTTCCAGGCCTTTTCCGTCACATAGAAGATCTTGGGAACCACGGCTCGTGCCCAGCTGGGCAGCTTgCTGTTGAGATAGACCCGTTTCTCAGTGAACTGGCCAGACCCGTGGGTGGGATCCTCAAAAGGCTCATTCTGCACCACCTCCACTCCTTCACCTCGCTCACTCTGCTCATGGCTGTGCTTGCTGATCATATACAGCTGACCAATCCTGTACTCCTCCACTGTGAGTGGCATACATATCCTGTACTCCTTCATCAACATGGTCCTCTCCACAGCAGCACGCTTCCTGCACTTCGTAAGTGATGAATGAGTTCTCCGGCTGGATGGTGCTGCTGTACTCAAATCAGTTCAGACATTTATtctccaaaaataaaaacaacacgTTAGAACAGTCAAACAAGTCCCAAAGTCCTAAATCCTCACACAGTTGCTGTTAATTACAGCGAACTGCACGCTCCCgttcagctgaaaaaaaaagtaacgttagctaggatTCTCCGTTCACACACAGCGTGAAAAAtccgtttttttctgatataaGGACAGTTTGAGTCATCTTTCAAACCCCTTCACAGCAGCTGTCTCCCAGTCTGGACTCCACTCTGCGCTCCTTCTCATGACTACGAACTGTACGAACAGTACGGACTGTACGGACCGAGCCTCTACCTGTCCCAATCCAGACACAGCGGCGGCGCTAGCAACATTTCAGAGTAAATGCAGCAGCGCGCGCACACAGGCGAACTCAGCAGCAGCACGCGGGGGTTCCCTTTTAATTCGCGCGAGTTAAATAATCCCCATTCCGCGGCCCCGCAGCGAGTGCACGCGGGAACAGCAGCCCGTCCTCCTGGGAAGTGTGCTGGGATGCTCGCACTGTGTggttggtttgtgtgtgtgtgtgtg

Function

symbol description
pitpnc1 Enables phospholipid binding activity and phospholipid transfer activity. Involved in phospholipid transport and signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: cytoplasmic phosphatidylinositol transfer protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12310 True 1101 lncRNA 0.42 6 8503214 8592870

Neighbor

gene id symbol gene type direction distance location
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 400673 8077924 ~ 8102541 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 483180 7964173 ~ 8020034 (+)
bax bax coding upstream 580685 7913373 ~ 7922529 (+)
LOC103042396 NA coding upstream 596917 7898727 ~ 7906297 (+)
LOC103047589 NA coding upstream 690918 7797622 ~ 7812296 (+)
trnag-acc NA coding downstream 8397 8601267 ~ 8601338 (+)
helz helz,LOC107665819,LOC107691233 coding downstream 11335 8604205 ~ 8684262 (+)
lmtk2 lmtk2 coding downstream 248219 8841089 ~ 8885543 (+)
rai1 NA coding downstream 1038985 9631855 ~ 9720856 (+)
drc3 NA coding downstream 1218069 9810939 ~ 9821052 (+)
G9002 NA non-coding upstream 129073 8373290 ~ 8374141 (+)
G8975 NA non-coding upstream 199289 8281829 ~ 8303925 (+)
G8972 NA non-coding upstream 217270 8244449 ~ 8285944 (+)
G8957 NA non-coding upstream 343601 8159112 ~ 8159613 (+)
G8804 NA non-coding upstream 370204 8132803 ~ 8133010 (+)
G9073 NA non-coding downstream 1954 8594824 ~ 8595863 (+)
G9088 NA non-coding downstream 112562 8705432 ~ 8762647 (+)
G9096 aimp2,LOC107724742,LOC107691232,LOC107548699 non-coding downstream 180634 8773504 ~ 8774905 (+)
G9108 NA non-coding downstream 205990 8798860 ~ 8801890 (+)
G9111 NA non-coding downstream 212657 8805527 ~ 8805727 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other upstream 17278 8464116 ~ 8485936 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other upstream 61385 8438786 ~ 8441829 (+)
LOC103045148 LOC108432039 other upstream 1768511 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 2126510 6357402 ~ 6376704 (+)
G8287 ttc25,LOC106601019 other upstream 2773714 5728922 ~ 5729500 (+)
G9074 NA other downstream 2999 8595869 ~ 8596783 (+)
G9113 NA other downstream 216831 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 326959 8919829 ~ 8931005 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other downstream 906963 9499833 ~ 9611812 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other downstream 1386205 9979075 ~ 10029590 (+)

Expression


Co-expression Network