G9096 (aimp2,LOC107724742,LOC107691232,LOC107548699)


Basic Information

Item Value
gene id G9096
gene name aimp2,LOC107724742,LOC107691232,LOC107548699
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8773504 ~ 8774905 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12360
TCTACTCACCTTGCCAAGAAGGGCGTCCAGATCAGCCGTGCCCGTGAAGGCACTGACCGCAGGACTCTGCGACAGCGTGGTGGCGTCCAGGTCGGCGTCCGGAGTAGTGACTGTCTTGGCCAGGCCGTCCACTGCTGCTTTCAGCTCGTACAGCTTTCGCATTATCTCGTCCTGACGAGCCTCCAGCGCTTTGAGAGCAGGATCCACCTCCCCattTACCAAAATTGAGGAACTATCCCACTCAGAAAAAGCTCCTCACTGCCTGCAGGACATTGTTTACTCTCCTAAAACTGAATCAGCTTCCCAAAAATAAACCTGCATCTGCGCAGACAGGACACTGCTCAATACACACACTGAGGGCCAG

Function

symbol description
aimp2 Predicted to be involved in positive regulation of aminoacyl-tRNA ligase activity. Predicted to act upstream of or within apoptotic process and cell differentiation. Predicted to be located in cytosol and nucleus. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alar plate midbrain region; head; immature eye; midbrain; and musculature system. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy. Orthologous to human AIMP2 (aminoacyl tRNA synthetase complex interacting multifunctional protein 2).

NR:

description
PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12360 True 364 lncRNA 0.42 2 8773504 8774905

Neighbor

gene id symbol gene type direction distance location
helz helz,LOC107665819,LOC107691233 coding upstream 89242 8604205 ~ 8684262 (+)
trnag-acc NA coding upstream 172166 8601267 ~ 8601338 (+)
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 670963 8077924 ~ 8102541 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 753470 7964173 ~ 8020034 (+)
bax bax coding upstream 850975 7913373 ~ 7922529 (+)
lmtk2 lmtk2 coding downstream 66184 8841089 ~ 8885543 (+)
rai1 NA coding downstream 856950 9631855 ~ 9720856 (+)
drc3 NA coding downstream 1036034 9810939 ~ 9821052 (+)
gid4 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 1047332 9822237 ~ 9835030 (+)
LOC103025255 NA coding downstream 1069514 9844419 ~ 9849376 (+)
G9088 NA non-coding upstream 10857 8705432 ~ 8762647 (+)
G9073 NA non-coding upstream 177641 8594824 ~ 8595863 (+)
G9056 pitpnc1,LOC108412868,LOC108274028,LOC103469328 non-coding upstream 180634 8503214 ~ 8592870 (+)
G9059 NA non-coding upstream 218783 8554254 ~ 8554721 (+)
G9002 NA non-coding upstream 399363 8373290 ~ 8374141 (+)
G9108 NA non-coding downstream 23955 8798860 ~ 8801890 (+)
G9111 NA non-coding downstream 30622 8805527 ~ 8805727 (+)
G9112 NA non-coding downstream 31992 8806897 ~ 8807677 (+)
G9083 NA non-coding downstream 41141 8816046 ~ 8818568 (+)
G9124 NA non-coding downstream 125106 8900011 ~ 8900571 (+)
G9074 NA other upstream 176721 8595869 ~ 8596783 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other upstream 287568 8464116 ~ 8485936 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other upstream 331675 8438786 ~ 8441829 (+)
LOC103045148 LOC108432039 other upstream 2038801 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 2396800 6357402 ~ 6376704 (+)
G9113 NA other downstream 34796 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 144924 8919829 ~ 8931005 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other downstream 724928 9499833 ~ 9611812 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other downstream 1204170 9979075 ~ 10029590 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 2654168 11429073 ~ 11438332 (+)

Expression


Co-expression Network