G9108


Basic Information

Item Value
gene id G9108
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8798860 ~ 8801890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12372
aaatgctatttttatttacccTCTGCTCCGATTTTGCCATCGTTGTCATCGTCAGCTGCTGATAGGAAGTTTTTGGTCTCTTTGTCGGTCAGCACACGGGCTCCAGGTGAAAACCTCTGCAGGAAGAATTGAGTTCTTCCTCCTCAATGTAGCCACTGCCATCGTTGTCGAGAATGCCAAAAACAGTCTTCACTTCTTGGGGACTTTTCTTGGTGAGACCACACAGCTGGAAGAATTTCTTGTGACTGAAAGAATCTGGTGAGCGCTGTCTGTCAAACAGGGGATTTATATACGTCTGATTGCAGCGACAATAGGCAATTCTTAAGTTACCTGTCTGTGGATCAAATTCGACCTGCCAGGCCCGGCTCAAATTTCCTGCCTAACTAATTAACCTTTACTATTTATAACCAGCCAGCAGTGCAGAGGTGTGGACAGGAGTGGGTATAGGTCAGTCCTGACACCCTCTTTTACaggaaaatatgaaataataagtGCTGTGTCTCTTTTGCCTTTTCATTTGCCATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12372 True 526 lncRNA 0.44 3 8798860 8801890

Neighbor

gene id symbol gene type direction distance location
helz helz,LOC107665819,LOC107691233 coding upstream 114598 8604205 ~ 8684262 (+)
trnag-acc NA coding upstream 197522 8601267 ~ 8601338 (+)
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 696319 8077924 ~ 8102541 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 778826 7964173 ~ 8020034 (+)
bax bax coding upstream 876331 7913373 ~ 7922529 (+)
lmtk2 lmtk2 coding downstream 39199 8841089 ~ 8885543 (+)
rai1 NA coding downstream 829965 9631855 ~ 9720856 (+)
drc3 NA coding downstream 1009049 9810939 ~ 9821052 (+)
gid4 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 1020347 9822237 ~ 9835030 (+)
LOC103025255 NA coding downstream 1042529 9844419 ~ 9849376 (+)
G9096 aimp2,LOC107724742,LOC107691232,LOC107548699 non-coding upstream 23955 8773504 ~ 8774905 (+)
G9088 NA non-coding upstream 36213 8705432 ~ 8762647 (+)
G9073 NA non-coding upstream 202997 8594824 ~ 8595863 (+)
G9056 pitpnc1,LOC108412868,LOC108274028,LOC103469328 non-coding upstream 205990 8503214 ~ 8592870 (+)
G9059 NA non-coding upstream 244139 8554254 ~ 8554721 (+)
G9111 NA non-coding downstream 3637 8805527 ~ 8805727 (+)
G9112 NA non-coding downstream 5007 8806897 ~ 8807677 (+)
G9083 NA non-coding downstream 14156 8816046 ~ 8818568 (+)
G9124 NA non-coding downstream 98121 8900011 ~ 8900571 (+)
G9129 NA non-coding downstream 130414 8932304 ~ 8933136 (+)
G9074 NA other upstream 202077 8595869 ~ 8596783 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other upstream 312924 8464116 ~ 8485936 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other upstream 357031 8438786 ~ 8441829 (+)
LOC103045148 LOC108432039 other upstream 2064157 6709085 ~ 6734703 (+)
nmt1 nmt1,LOC108432052,LOC102778525 other upstream 2422156 6357402 ~ 6376704 (+)
G9113 NA other downstream 7811 8809701 ~ 8810467 (+)
bri3 bri3 other downstream 117939 8919829 ~ 8931005 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other downstream 697943 9499833 ~ 9611812 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other downstream 1177185 9979075 ~ 10029590 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 2627183 11429073 ~ 11438332 (+)

Expression


Co-expression Network