LOC103034760 (LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753)


Basic Information

Item Value
gene id LOC103034760
gene name LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 9499833 ~ 9611812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12597
GCACGGCACGAGCTCCATCATAATATTTAACACCCACTCCCCCCTCCATAACCCCTCCCTCCCTGCCTCCCTCCATCCGTCCGCTGCCTTACCACCCCTAACCCTGGAGGAGCGCCGCTCACTGCCGGCCTGGCTGGACGGGCAGTGACCTGCGGGAGCGGAGCTTCTGGCGGAGGGACGGAGATACTACACCTGTCACGAGAAGGAAGGAGAAGAACGgggctttttttgttttgtttcggGCTGAGCTGTGCTGCTCTTCCAGCTCGTGTAGGTTATAAGGACTATAACACGACTTGACGTGGCTTTTTCATTCTCTGATCCCTTTTTTAAGCGCTAGATTCGCTCGTTTATAGCCGGAGGTGGAGCTCTCCGAGAGCGGGGAGACGGACTGCGCTGATGCGGCTTCGCGTCGCCTACGTGCCGGAGCCGGGATGCAGCTGGCCGCGGTTATTATAGGCTCGGCGGGGACCGGGCTGTATGGAAAGActtatagataaatagatagattgATTATCTATCTTAGGATAGatctttctatttattatttttctcattgtaaacttgtaaaaaaacaagatttattcttcttattattatttatttgtttatttattatttttattcctttctttCCCACGTGTTATTATTAATTGGGCTTTACTGAGTTGCTATATCTAACTATCTAACGTTATATATCATCCTATCATCTTCAGCATGCCGCTGATGTGGCACTCATAACTAA
>TU12599
GGAACAACGAGGGGaacgaggaggaggaagagtacAACCCGACAGGGGAGGCCACTGCTGAGTCATACCCCAACTGGCTCCGCTTCCACATTGGGATTAACCGCTACGAGCTCTACTCCAGACACAACCCGGTGGTGGAGGCCCTGCTGAAGGACCTGCAGGCGCAGAGGATCACCAGCGTAGCGATGAAGTCTGGAGGAACTCAGCTCAAACTCATCATGACCTTCCAGAACTACGCACAGGCGCTCTTCAAGCCCATGAAGTAAGTGGAATCCCTGATTTATCGTCCATAACACAAGAAGATTAGGGGGATCTCGGGTGCCCCCAACATACGAGAAGCACAAAGTGCACAAAACGCACCATAATCCTGCTTTATATGCACTTCAGAGCAAAGAACCCCAAACCCTGAAACCCTGAAAAGCTTAATCCTGAGCTTATCCACAACTCTGAGTCCTTTACTGAGATAAGTACACACCTATTGTGAATAcgagggatgcactgaatatttcaACCTGAAAATATAACTGAAAAGAGTCATATACAGTACctgttaaaagtttggacacacctcctcaTTCTCATTTTcgtttttcttaatttctttatttaatgtgtttatttcctAAATTATAGATTCATATCAAATACATTAAACAGTTAAGATACTCATATGGAATT
>XM_022673312.1
TGGAGGCACTGAGAAGAAACCCAACCAATCCAGTCCGGTCCCGGTGACGCGGGAGAGGGAGGCTTCGGCACGGCACGGCACGGCACGAGCTCCATCATAATATTTAACACCCACTCCCCCCTCCATAACCCCTCCCTCCCTGCCTCCCTCCATCCGTCCGCTGCCTTACCACCCCTAACCCTGGAGGAGCGCCGCTCACTGCCGGCCTGGCTGGACGGGCAGTGACCTGCGGGAGCGGAGCTTCTGGCGGAGGGACGGAGATACTACACCTGTCACGAGAAGGAAGGAGAAGAACGgggctttttttgttttgtttcggGCTGAGCTGTGCTGCTCTTCCAGCTCGTGTAGGTTATAAGGACTATAACACGACTTGACGTGGCTTTTTCATTCTCTGATCCCTTTTTTAAGCGCTAGATTCGCTCGTTTATAGCCGGAGGTGGAGCTCTCCGAGAGCGGGGAGACGGACTGCGCTGATGCGGCTTCGCGTCGCCTACGTGCCGGAGCCGGGATGCAGCTGGCCGCGGTTATTATAGGCTCGGCGGGGACCGGGCTGTATGGAAAGActtatagataaatagatagattgATTATCTATCTTAGGATAGatctttctatttattatttttctcattgtaaacttgtaaaaaaacaagatttattcttcttattattatttatttgtttatttattatttttattcctttctttCCCACGTGTTATTATTAATTGGGCTTTACTGAGTTGCTATATCTAACTATCTAACGTTATATATCATCCTATCATCTTCAGCATGCCGCTGATGTGGCACTCATAACTAACTCATATAAAaggacttttttattattttttttgtaaataatattttcttaaaaaaaaaaaaatgatcctcTTTCGCAAGTTCAGACTGCTCATCTTAATGGTGTTTCTCGTGGCGTGCACCATGCACATCATGATCGACCTGCTGCCCAAGCTGGAGCGGAGAGCGGCCGGCCCGGTCTCCGGCTCTGGAGGAGTTATAGGCGgcgttggtggtggtggtggaggcgGTGGTGGAGTAGGAGGAGACGCGGGCTGCTCCTGCGCACACAGCCCCAGCGAGGAGCCTCGCGGGCGGGCAAACCAACGTTCCAGAGCCGCTGCAGCTCAAGCAGGCTGGCCGGGCAAGCACACGCTGAGGATACTGCAGGACTTCAGCAACGAGCCGAGCTCCAACCTCACCTCGCAGTCACTGGAGAAGCTGGCCGGCGCTGGGGACAGGGCAGAGCCGGTGAAAAGAGCGCAGGAACCGGCGGAGAAGACCCAGAGGAGCCTGATAAGGGAGAGGGGCAGCCGGGACAAGGAGAAGCCGGACCAGCGCGCCTCCTCCCGGCTCACCGCGCTCTACGAGCACCCGCTTTACAGGGGCGAGCTGCCACCGCTGACGGACGACGACACGCTGTTTAATGTCAACACTGACATACGGTTTTATCCTAAAGCTGCGGGGAACCAGGAATGGAACAACGAGGGGaacgaggaggaggaagagtacAACCCGACAGGGGAGGCCACTGCTGAGTCATACCCCAACTGGCTCCGCTTCCACATTGGGATTAACCGCTACGAGCTCTACTCCAGACACAACCCGGTGGTGGAGGCCCTGCTGAAGGACCTGCAGGCGCAGAGGATCACCAGCGTAGCGATGAAGTCTGGAGGAACTCAGCTCAAACTCATCATGACCTTCCAGAACTACGCACAGGCGCTCTTCAAGCCCATGAAGCAGACCAGGGAGCAGGAGACGCCCCCGGACTTCTTCTACTTCTCCGACTTTGAGAGACACAACGCAGAGATCGCAGCATTTCATCTCGACAGAATCCTGGATTTCCGGCGTGTCCCGCCAGTGGCAGGCAGGCTGGTGAACATGACGCGGGAGATCCGGGACGTGACCCGCGACAAAAAGCTCTGGCGGACATTTTTCATCTCCCCAGCCAACAACATCTGCTTCTACGGGGAGTGTTCGTACTACTGCTCCACTGAGCACGCTCTGTGCGGAAAGCCAGACCAGATCGAGGGCTCTCTGGCCGCCTTCCTTCCTGACCTCAGCCTGGCCAAGCGCAAAACCTGGAGGAACCCCTGGAGACGCTCCTACCACAAGCGCAAGAAAGCAGAGTGGGAAGTGGATCCAGATTTCTGTGATGAAGTCAAGCAGACTCCGCCCTATGACCGAGGAACACGCCTGCTGGACATCATGGATATGACCATCTTTGATTTCCTCATGGGCAACATGGACCGCCACCATTATGAGACCTTTGAGAAGTTTGGGAATGAGACATTCATCATCCATCTGGACAACGGCAGAGGGTTTGGAAAACACAGACATGATGAAATGTCCATCTTGGTACCTTTGAGCCAGTGCTGCAGGGTGAGAAGGTCCACCTACCTGCGACTGCAGCTGCTGGCGAAGGAGGAGTACCAGCTGAGCTCTCTGATGGAGGAGTCGCTCCTGAGGGACCGcctcacccccatcctcatcAAGCCGCACCTGCAGGCTCTGGACCGCCGCCTGCGCCTGGCCCTCAACGTGCTGGCCGAGTGCGTGGAAAAGGAGGGATATTCCGCCGTGGTGGAGGACGACCTGGAGCCCCAGCCCGCGGCCGCACCCCTGCTCCATCAGGCCACCAGAGCCAGGTAGTAGGGGCCCTGGGAACTGGGAGTGGCAGAGAGCCCCGCTCCCCTGCCTCGCTGGAACAGGCCCGCCATGAGCCTGAGCCTCAGGCTCGCGCTGGAATTCAGCCGCAGCTTTGAATTCAGTGAATTCCGAGACTCGCCACAAACGCCTCTGAACTGACTCAAACTGCCCCGCCTACATGTCCATGTTCACGTCCACACGTGTGTGTTGTATGTCCACAGATCAGATTCCAGACGTGGAAgtgcttatttttttccaagagGCTTTAcggaaagagaaaagaaagaggtccacttactttttttcttttcttttttttgtctttttttttgatggTACACACAAGTACCTGGgactgtatttattgttcatttttatacaaaaaaaatctttttttttttttttgtcttttttttttttatcggtAACCGAAGCTGCAGGACATACGGTTTGTTTGTTACAACATCCTGCTTTTTGTTGTTGCAGAGTGGGTCATGCTGAAGtttaatttattcagttttgcttatttatctttcagagatttttttttttatatatatattttgagcaCGGCCGAAAAAAAAATGGCAGTTTTTACATGATTTAAATGTGGCTTGTGGTTGCAAATGAAGGGAATGTTCTTCAGAATTTCTTGctacccactcactaggacttctctctgactctctgacTCTGGCCGCTGATGCTGATGTCCATGATTGGAGCCTGCGTTACTCAATGCCACCATAGTTTCAGCTTaaatacatgcttttttttaactagtTTCTTTTAATAGTTTTGCTTACTGATTAAAATCATGTCCATTCAAATTGCCATTTTTATTTCACAGTGCAGGTGTGCAGAAGTCCtcatagtattttattttatttgtttttttaagatgagGAACTGTTGGAGGAACAGTAGAGTGTAAAGGGTAGTCCAACTTTAGTTAACACTACGCTGACTTCACTACGTACTTCTACGGCTGCTACGGTTTAGCTGTTTTGTATGTGGCCAACTGTTGCCGTGCCCTGTGTGGGATCTTTTCTGCATAAGGGCGTATTCAAGCTTTAAGAGGAGTACTGCAGTGCGGTGCTTCTCCTGCAAAGACTCTTATCCAACTCTTCAAGCCTGCTGACCTGATTTGCTGTTCTTGGCCTCCGGTTGCTTTTGGCACCTTTCTCGGAAATGTTCCGTAAATTGGATATTGTGCAATACAACATAGAGAGgttgatttttctcttttttttctctcttcatgGTACGAACTTATCTCCTATCACTTTCATTTGGGTTTATTCAGCGGCGGATTGCGCACGCCATTTGATGTTATTCAGAAGGTTACACTTGGTAGGAGGAGTGGAGAATGACTCTGATTGGTGTTTTTGTTCAGGCAGCCCGGGAGCCGCCTGCCGTCTGCGACCCCATGCTGAACGCACCTGTTCTCACGGCGCGGGTAGCTTCGCCGCTTCCACAGACACTAATGCAAACGCCGCTCTGCTAACGTCTCAGTGGGTGCGCTCTTACAGGCCTGGAGATGTGATCGCAGAGAATAAATCAAGGacactttaatatatatataatagtttgACTGATTGAAAGACGCAAAGACTATACCAACTGACCCCTGTTTTCACAGCATCGCAGGCCATTTCCTTTAGCGTACATTGTTTCGCCCACACTTTGGCGTGTGGGTTCTCTCTTGGGTTCATCCTGCCATTTAGACATTACAAAGCAGAAACAGTCACACTTCTGCCCCACTGTATATAAAgcctttgtgttttttgtacgATAAAGCAAAAGGCCTGTTCGCTGCAGTTGTTACTggaattttttaaatactaaagaACCTTCTAGAAAGTTCTAGTTATCACAGTTATCACACTTTCACTCTGAAGCTCATTTTTACTACCATGCTTTACTGCACATTTTACATGACTCTGAAAAAGGTCAATATCTTTAGCATCTCTCTCGCATTTCCAGCTCTCAGTCGTGAATCATCATCTTCTAAACTACAGCCAAAAAGGCAAGCGAGTGCCTTTACCATTTTcacaggcttaaaaaaaaaaaaaaaacagactcttACTGATACATgccaacttttattttaaaacaacaagCTATTAAGAGGCACTCAGTGCACCTGTGTGTTCTATTTGAAggctaatttttattatttattgcttaTTAATGTCTAAAGGCCCTTTTGCACGAAGGTACATACATGAtatttacagacagaaaaaagtCATACATGTCAAGTTTTGAAAATGAACTGtatttaatgatattaaataatataaaatacaactAGATAactaaatcaataaaatcaggCTGACCAACAAAAGCTCCTTTGTCAtggttaaagataaaaaaattaacataaaggTGGCAGCAAAGTTGCTCAATTTGTTCTGAGCggaaagaaaaatgtatgtgaCGAGAAACACACcgactataaaaatacaaaaaaaaaactataaaatatggCGGATCAGAGCTGAAAGAATGTGACATAGCCATTAGGTTTGGACcatataactgtataataactccaaATAAGCACATTTCAAAATAACTGTCTAATGTGTAAAATTTCTGTGTAAAAATGTCCATCTAGTAcatttgtgtgcatttgtggGGAAAAATATACAAACCCATAGTAGTTGTGAGTTTAGCGACTTGCTAAGTTCGTCTAAAAGCTATCCAGTCTGAAAGACGTGCCTCAAAACAGTCGAAAACGCTTTTAAAACCATTCACTTGACTGTGTGCTCTCAGAAATGTGGATTTAGATTCTAAACCTAAGTGATTTGAGCCTCAGTTAGTTGAAAGATGCTATGTGCTGTGGTGTTTAGCCTGTTACTTCACTAACTTAGGTCTTAGCcgagctaacaagctaattaTAAACCCAATAATGGCAGAActtgtcacatttttttatttctgtcagttcaAACTAAGTTTTTCACACTTTGCTCCCTCAGACATGAGTATTTATTATCAATATTTGGGTCAGTCGGTCAACTGTAGTCATTAGTCAGCAgttaaagctagctagcttagcaagTGAGCGAGTGAGCTAGCTCTAAAACAACACACTATGTAAAATTTCAGTTCAATGTCCATCTTGTCCATTTAGGTGTGTTTAAGAAAATCCACATAAATCCACAGAAGTTACGAGTTTAGCCACTTGCTAAGTTTGTCTGAAAGAAATCCAGTATGAAAAACGTGCCTCAAAACAgtcaaaaactatttttaaaatattcccTCAACTGTGTGTTATCAGAAATGAGGATTTATCTGTTAAACCTAATTTATTTGAGCCTCAATTAGATGGAACATACTCTGTACTGTGGTGTTTAGCCTCTTAGCtgagctaacaagctaattaCAAGCCCAAACGTGGCAGAACTTgtcacatttctcatttctgtcAATCAGAAACAAGTTGCTCAGACTTTGCTCCCACAGACATGAGTATTTATCGTTAATATTTGGATCAGTCAGTCAACTGTAGTCAATAGTCTGCAGtcaaagctagctagcttagcaagTGAGCGAGTAAGCTAGCCCCAGAACAACACTTCTATTTCTATAACTGCAGTTGCTGGATCTGACGTGTTTTTGTCTAAATGTTTACAAGTGGAGTTTCAGTCAGTCAGACTTGAGTGTTTTCTGTAGTGAACTgaatattagctagcttgctaaataagctaatcagctaacaagctaatgctaatcacctttttttctctctcctgattCTGAGCAGCCtaacctttttttattagtcagACTTTaggtttaacatttattaaacaattaatttgTGTAATAAGTGTTCACTAAGACTAAGCTCTGTGACCATGTGATCATCAAATTCAATCTCTGTAaacaatcattttttaattgatttgttTTAAAACTAGACAGGATGAGATGGTACTGAAGTACACAGCACTACCATCTGCACTATTTGCATAGTTTACGCTATGCTTTACGCAGATCTGTTTCTACGTAcgaaaaaattaaaattgtacTTGGTGTGAAAGGGCCTTAAGCATGTTACATTTGCGCAGAACTTTATCTCGCGTTATctctttgttgttttgtgtttggcTTCATGCTGTTTTTGCACTCTGCTTCACAAGGTCCCCGTTTCCGAGAAACATCCGAACCAGTATCAAATCCAGTATGAGTTGAGTTGACCATCGAGTTGCGCCGGCTCAATATGAAAAAAGGCTGGTGcgtgtatgtgtttgtttctgtgtaaACTCAGTGCCTGTGCAATGCTAGAGATACTtgaatgtttttggatttgtcaCAAACGGACATTCGAAGCCCCGCCCTCTGGACTCAAGACCCGCCCCCGAAGCCAGAGGTGGGTGGAGTTTTGTGGGGTTTCTCAGCAGGGAGAAGACAGGATCACACTGGGCTTTTGAAGGTTAATCTGGCTGGAATATCTCCCTGCTCTTTCATCGAGTATGTGTACATATCTATAAATAGTGTACGTAGGATCCCAGAGGCTGTTGGTAACAGTCgaaatgcttctgttttttctctctctctcttatgcaTTGTTACTGTGACGACTTGTTTGCAAAATGATAAAAGTGTGCAATAAATGAAGCGAAGCTGTTGTTGAA

Function

NR:

description
PREDICTED: extracellular serine/threonine protein kinase FAM20C-like

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

RNA

RNA id representative length rna type GC content exon number start site end site
TU12597 False 745 lncRNA 0.48 1 9499910 9500654
TU12599 False 678 lncRNA 0.45 2 9507940 9514893
XM_022673312.1 True 7321 mRNA 0.45 10 9499833 9611812

Neighbor

gene id symbol gene type direction distance location
lmtk2 lmtk2 coding upstream 614290 8841089 ~ 8885543 (+)
helz helz,LOC107665819,LOC107691233 coding upstream 815571 8604205 ~ 8684262 (+)
trnag-acc NA coding upstream 898495 8601267 ~ 8601338 (+)
LOC103045652 arf2a,arf2b,arf3,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 1397292 8077924 ~ 8102541 (+)
gpatch8 gpatch8,LOC107601302,LOC107674594 coding upstream 1479799 7964173 ~ 8020034 (+)
rai1 NA coding downstream 20043 9631855 ~ 9720856 (+)
drc3 NA coding downstream 199127 9810939 ~ 9821052 (+)
gid4 gid4,LOC107724729,LOC106601817,LOC107555661 coding downstream 210425 9822237 ~ 9835030 (+)
LOC103025255 NA coding downstream 232607 9844419 ~ 9849376 (+)
LOC103027271 LOC102785429,LOC101482735,LOC102314240,LOC107091756 coding downstream 274138 9885950 ~ 9891642 (+)
G9265 NA non-coding upstream 16248 9478042 ~ 9483585 (+)
G9263 NA non-coding upstream 37162 9462346 ~ 9462671 (+)
G9261 NA non-coding upstream 38073 9461295 ~ 9461760 (+)
G9250 NA non-coding upstream 175408 9324137 ~ 9324425 (+)
LOC111193264 NA non-coding upstream 242279 9225054 ~ 9257554 (+)
G9304 NA non-coding downstream 35954 9647766 ~ 9648002 (+)
G9305 NA non-coding downstream 39406 9651218 ~ 9651418 (+)
G9300 NA non-coding downstream 113150 9724962 ~ 9726183 (+)
G9374 tbl3 non-coding downstream 255218 9867030 ~ 9870987 (+)
G9379 NA non-coding downstream 270522 9882334 ~ 9883788 (+)
bri3 bri3 other upstream 568828 8919829 ~ 8931005 (+)
G9113 NA other upstream 689366 8809701 ~ 8810467 (+)
G9074 NA other upstream 903050 8595869 ~ 8596783 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other upstream 1013897 8464116 ~ 8485936 (+)
LOC103040872 snu13,LOC103040872,LOC101154660,LOC105910236,LOC107573053 other upstream 1058004 8438786 ~ 8441829 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other downstream 367263 9979075 ~ 10029590 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1817261 11429073 ~ 11438332 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 2690715 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 2915877 12527689 ~ 12600530 (+)
G10003 NA other downstream 3001879 12613691 ~ 12618197 (+)

Expression


Co-expression Network