LOC111193317 (gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950)


Basic Information

Item Value
gene id LOC111193317
gene name gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 9979075 ~ 10029590 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU12731
CACACTGCGCGCTGGCTGCTCACCACAGCAACGGAGGCAGGCAGGCAGATTGCGCTCGGGAGCTGAGCAGTGTGGCAGGAGAgcagagaacgagagagagagagagagaaggaagtaAAGAAGGAAGAAGGGAAGAGCTAAGAGATGGAGACGGAGGAGAGCTTCGATACGGAGGGCAGTTTTGATGATGCGTCTTGTCTGTCCCCACAGAGCCCCGGCTCGCTCTCTCCAGCCAGGAGGCAGAACAAGGAGAGGGAGATCAAGGAGACCAAAACCActATTAACTTCGTCACGTTCCCTCTGCCCCAGGCCACGCCTGAGCAGCAGCTCCTCAAACCCAATGAGTGGAGCTACTGCGACTATTTCTGGGCCGATAAGAAGGACCCTCAGGGGACCACCACAGTGTCAGGCTTCGAGGTTCTGCTGCAGAAGCAGCTGAAGGGAAAGGTGACGCAGAAAGAGATGGCTGAGTTCATCAGAGAAAGG
>TU12733
AGAACAGGAAGAGAGTACAGAGCCCCGGCTCGCTCTCTCCAGCCAGGAGGCAGAACAAGGAGAGGGAGATCAAGGAGACCAAAACCActATTAACTTCGTCACGTTCCCTCTGCCCCAGGCCACGCCTGAGCAGCAGCTCCTCAAACCCAATGAGTGGAGCTACTGCGACTATTTCTGGGCCGATAAGAAGGACCCTCAGGGGACCACCACAGTGTCAGGCTTCGAGGTTCTGCTGCAGAAGCAGCTGAAGGGAAAGGTGACGCAGAAAGAGATGGCTGAGTTCATCAGAGAAAGG
>XM_022673417.1
CGTCGTCTCTAAGAGCCCAATAGTCCACGGACACACTCTTAACCCACTTACACTCAGAACTCCTAAACAAAGCCTTTCAGAAAGTTCCCGAGGCTGGGGAAGACGGGGTGAGGGTTCATGTCTGTTCATTCTTTCCACATCCTTGGATTCTGACCCTGGGATTCGTGTCGTTTTGTGCTGAGGGGTGTTTCCTTGGGGAGGTTTCTCTCTAGGGCTGCATGTTAGATGCACTCAGGACTCTTATGTTCTTCATCCAGATTTCTCTTATCTGATTTTCTTGTTTGGAAAAGACTGATCTGAAGATCTGGAGCACATGGAGTCTTCCTGCTGCAGTCCTGCTGTAGAAGAGGAGGTGGATGGTGGTCTTCTCCCCACAGGCTGGAAGTGCTACAGATCAGCCGAGGGGCGTAAATACTATGTCAACACTCGCAGTAAAGaGACAACGTGGGAACGGCCATGTTTACCAGCCTCTGGACCAAAGACAGCTCGCCCGCACAAGAACTCAGTGAACGGACGCCAGTCTATTGGAGTTGCTGTCCAGCAGCTGGAGAAGTCAGACGGGTCGCAGAGGAAATCCAGCATGAACGGCCAGAGCCCCGGCTCGCTCTCTCCAGCCAGGAGGCAGAACAAGGAGAGGGAGATCAAGGAGACCAAAACCActATTAACTTCGTCACGTTCCCTCTGCCCCAGGCCACGCCTGAGCAGCAGCTCCTCAAACCCAATGAGTGGAGCTACTGCGACTATTTCTGGGCCGATAAGAAGGACCCTCAGGGGACCACCACAGTGTCAGGCTTCGAGGTTCTGCTGCAGAAGCAGCTGAAGGGAAAGGTGACGCAGAAAGAGATGGCTGAGTTCATCAGAGAAAGGTAGGCCAGTCCAGCCCTGTGGGTCCGGTTCTCTCTCAGTGTAAAAATACTTCCATTACCATAAACCTCCACATTACTTACATCACTTTATCACCATTTTATccttttgttgtctttttttgacacattttaaaGAAAGCAAACCCGTGCAACCTAGcgggaaaaaaatagattaaagtatactaagcattattatgctttaGTGCACt
>XM_022673423.1
GACAAAGACACGGGCATGCCAGCGAGCAGACAGGCACAGCCAGGAGGAGAGCAGGCCATATGGGCAGCCTGCTTGCGGACGCCGGAGCACGGTCAGGGGCTGAGCCAGGGCCAGGCCGGGGAAGGGTGGATCGTAGTGGGGCAAGAGGTGCGGGACTGGAGAGGAGGACGGAAGGCTGGGGCGCGGATAGGGGAACATCAGGGCACAGCGGGACAGGATAGGACGGGACGGAACAGAGCGAGCCCCGGCTCGCTCTCTCCAGCCAGGAGGCAGAACAAGGAGAGGGAGATCAAGGAGACCAAAACCActATTAACTTCGTCACGTTCCCTCTGCCCCAGGCCACGCCTGAGCAGCAGCTCCTCAAACCCAATGAGTGGAGCTACTGCGACTATTTCTGGGCCGATAAGAAGGACCCTCAGGGGACCACCACAGTGTCAGGCTTCGAGGTTCTGCTGCAGAAGCAGCTGAAGGGAAAGGTGACGCAGAAAGAGATGGCTGAGTTCATCAGAGAAAGGTAGGCCAGTCCAGCCCTGTGGGTCCGGTTCTCTCTCAGTGTAAAAATACTTCCATTACCATAAACCTCCACATTACTTACATCACTTTATCACCATTTTATccttttgttgtctttttttgacacattttaaaGAAAGCAAACCCGTGCAACCTAGcgggaaaaaaatagattaaagtatactaagcattattatgctttaGTGCAC

Function

symbol description
gas7 Enables identical protein binding activity. Predicted to be involved in actin filament polymerization and neuron projection morphogenesis. Predicted to act upstream of or within actin filament bundle assembly; neuron differentiation; and regulation of cell shape. Predicted to be located in ruffle. Predicted to be active in actin filament; cytoplasm; and plasma membrane.

NR:

description
PREDICTED: growth arrest-specific protein 7-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU12731 False 486 TUCP 0.46 3 10005524 10029382
TU12733 False 296 lncRNA 0.51 4 9996946 10029382
XM_022673417.1 True 1076 mRNA 0.50 7 9979075 10029590
XM_022673423.1 False 723 mRNA 0.54 4 9999512 10029589

Neighbor

gene id symbol gene type direction distance location
LOC103027891 LOC108412660,LOC105910935,LOC103366169 coding upstream 57151 9896719 ~ 9921924 (+)
LOC103027271 LOC102785429,LOC101482735,LOC102314240,LOC107091756 coding upstream 87433 9885950 ~ 9891642 (+)
LOC103025255 NA coding upstream 129699 9844419 ~ 9849376 (+)
gid4 gid4,LOC107724729,LOC106601817,LOC107555661 coding upstream 144045 9822237 ~ 9835030 (+)
drc3 NA coding upstream 158023 9810939 ~ 9821052 (+)
LOC103027259 LOC108432240 coding downstream 201210 10230800 ~ 10305660 (+)
LOC103034220 sdk2,LOC108261013,LOC107672436,LOC107744971 coding downstream 658975 10688565 ~ 10971395 (+)
LOC103033379 LOC103033379,LOC108432235 coding downstream 951909 10981499 ~ 11012666 (+)
LOC103033899 LOC108432233 coding downstream 1041802 11071392 ~ 11074633 (+)
LOC103047115 arhgap44,LOC108432230 coding downstream 1162305 11191895 ~ 11284400 (+)
G9387 NA non-coding upstream 46821 9931821 ~ 9932254 (+)
G9386 NA non-coding upstream 47766 9931048 ~ 9931309 (+)
G9382 NA non-coding upstream 84483 9894357 ~ 9894592 (+)
G9379 NA non-coding upstream 95287 9882334 ~ 9883788 (+)
G9374 tbl3 non-coding upstream 108088 9867030 ~ 9870987 (+)
G9419 NA non-coding downstream 254846 10284436 ~ 10386013 (+)
G9435 chmp6,LOC108432238,LOC105898699,LOC108277388 non-coding downstream 428179 10457769 ~ 10516372 (+)
G9480 NA non-coding downstream 581708 10611298 ~ 10617301 (+)
G9481 NA non-coding downstream 582135 10611725 ~ 10612614 (+)
G9486 NA non-coding downstream 588430 10618020 ~ 10618238 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 367263 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 1048070 8919829 ~ 8931005 (+)
G9113 NA other upstream 1168608 8809701 ~ 8810467 (+)
G9074 NA other upstream 1382292 8595869 ~ 8596783 (+)
LOC103021541 slc25a17,LOC108412891,LOC107666095,LOC107548713,LOC107743042,LOC566378 other upstream 1493139 8464116 ~ 8485936 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other downstream 1399483 11429073 ~ 11438332 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 2272937 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 2498099 12527689 ~ 12600530 (+)
G10003 NA other downstream 2584101 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 2744623 12774213 ~ 12821991 (+)

Expression


Co-expression Network