G9688


Basic Information

Item Value
gene id G9688
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11499079 ~ 11505890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13145
gaaactaaacaacgttcctccagggaccatggtgcacataaacacagtgtagacagaacaatagtgcaacagtacaaaagtgcagacagacaatacaacacaatacagacaaagaataatacagggctaaggggtgaaatggggTGGGGCCAAACTGCGCTAGAATggtaaaaaaacaggaaactaCCTGACTCATTACAGTAACAACAGCACAAGACTCTTGCACGGGTTGCACGGAGACATCGCTGAAGACCACAGACCAGCGCACCTACATCTTTTGAGGAATCCACAGCGGGTTGTGTGGGTAAAGTCAGGATTGAGCAGGTCCTCATCTTCACCTGTCCGGCGCTGTGCAGCACTTGGGTGTGGACAGGTTTCCTCCACAGACAGCTTCTAATCAACACCACATCCTATACTCTCTCTTCTGGATTTATCAGTTAAATCAAACATCCAAGGAAAAGCGCGAAACTGTTCAAATAACAATGAAATAAACCCAATGAAATAAACTCAGGACAGAGGAGAAAACTTCTGCTTCTTTCAGCTAAGATTCAGGAACTGAACAGT
>TU13146
gaaactaaacaacgttcctccagggaccatggtgcacataaacacagtgtagacagaacaatagtgcaacagtacaaaagtgcagacagacaatacaacacaatacagacaaagaataatacagggctaaggggtgaaatggggTGGGGCCAAACTGCGCTAGAATggtaaaaaaacaggaaactaCCTGACTCATTACAGTAACAACAGCACAAGACTCTTGCACGGGTTGCACGGAGACATCGCTGAAGACCACAGACCAGCGCACCTACATCTTTTGAGGAATCCACAGCGGGTTGTGTGGGTAAAGTCAGGATTGAGCAGGTCCTCATCTTCACCTGTCCGGCGCTGTGCAGCACTTGGGTGTGGACAGGTTTCCTCCACAGACAGTTTAACATCACAGTCTATTGttaaaacattagaaacataAGAGTTTATTTAAACCACAAAGGTATCACTGATAAATAATTGTGTACAGATCACTCATGCTAGTGCAAGTCTCAAATTGTACAAAAATCTATCCGTGTCTTCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13145 True 564 lncRNA 0.45 3 11499079 11505890
TU13146 False 534 lncRNA 0.50 2 11499079 11500864

Neighbor

gene id symbol gene type direction distance location
LOC103043560 LOC108432223,LOC107726800 coding upstream 23381 11441057 ~ 11475698 (+)
LOC103042933 atp5h,LOC103042933,LOC103361245,LOC107670447 coding upstream 154819 11338585 ~ 11344260 (+)
LOC103042308 ndel1,ndel1b,LOC108432229,LOC107670517,LOC107744966,LOC107599320 coding upstream 179301 11301473 ~ 11319778 (+)
LOC103047115 arhgap44,LOC108432230 coding upstream 214679 11191895 ~ 11284400 (+)
LOC103033899 LOC108432233 coding upstream 424446 11071392 ~ 11074633 (+)
gcat gcat,LOC107703894 coding downstream 49247 11555137 ~ 11562547 (+)
mcm5 mcm5,LOC107703892,LOC107670920 coding downstream 58559 11564449 ~ 11576840 (+)
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding downstream 80599 11586489 ~ 11597328 (+)
ankrd54 ankrd54 coding downstream 92413 11598303 ~ 11605494 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding downstream 100234 11606124 ~ 11622342 (+)
G9686 NA non-coding upstream 458 11495734 ~ 11498621 (+)
G9656 NA non-coding upstream 90845 11407983 ~ 11408234 (+)
G9643 NA non-coding upstream 136784 11362044 ~ 11362295 (+)
G9635 NA non-coding upstream 146371 11348436 ~ 11352708 (+)
G9603 NA non-coding upstream 266448 11231907 ~ 11232631 (+)
G9708 NA non-coding downstream 42292 11548182 ~ 11549131 (+)
G9727 NA non-coding downstream 76661 11582551 ~ 11584159 (+)
G9730 NA non-coding downstream 115112 11621002 ~ 11621408 (+)
G9770 spc24 non-coding downstream 249173 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 331750 11837640 ~ 11842193 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 60747 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1469489 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 1887267 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2568074 8919829 ~ 8931005 (+)
G9113 NA other upstream 2688612 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 796637 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 1021799 12527689 ~ 12600530 (+)
G10003 NA other downstream 1107801 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1268323 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1628711 13134601 ~ 13135118 (+)

Expression


Co-expression Network