G9727


Basic Information

Item Value
gene id G9727
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11582551 ~ 11584159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13197
CTTATACTGAGCCTGGGTGATCTGTCCTTTCTGGTAGTTCAGCATTAGCTGGGTGTTTTCAGCACGAACATGGGCGTCTTTGGTGATCTCTTTAATCTGCTCTGACAGATCACTGTGGAGATACCTTCCAGCTTTGTTGGCTGCTTTGCTGCTCGTCTTGCTGTCCATCTCTTCTGAATCAGTAGATCCTTGAGGATAAGTAGATTATTCTGGATTATTAAATGGATATATATTCCTGAATgtggctgtgctgctgctgctgctgttcctcctcAGACTGTGCTGACCGCTGCTCTGGGTTCTGATgcttctctctgcctcttttaTATCCACTCTTTACCCTCATGGTTTGCAAGTTCAAG

Function

GO:

id name namespace
GO:0010035 response to inorganic substance biological_process
GO:0010038 response to metal ion biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13197 True 362 lncRNA 0.46 2 11582551 11584159

Neighbor

gene id symbol gene type direction distance location
mcm5 mcm5,LOC107703892,LOC107670920 coding upstream 5711 11564449 ~ 11576840 (+)
gcat gcat,LOC107703894 coding upstream 20004 11555137 ~ 11562547 (+)
LOC103043560 LOC108432223,LOC107726800 coding upstream 106853 11441057 ~ 11475698 (+)
LOC103042933 atp5h,LOC103042933,LOC103361245,LOC107670447 coding upstream 238291 11338585 ~ 11344260 (+)
LOC103042308 ndel1,ndel1b,LOC108432229,LOC107670517,LOC107744966,LOC107599320 coding upstream 262773 11301473 ~ 11319778 (+)
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding downstream 2330 11586489 ~ 11597328 (+)
ankrd54 ankrd54 coding downstream 14144 11598303 ~ 11605494 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding downstream 21965 11606124 ~ 11622342 (+)
LOC103045592 NA coding downstream 39524 11623683 ~ 11631900 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding downstream 160253 11744412 ~ 11750209 (+)
G9708 NA non-coding upstream 33420 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 76661 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 83930 11495734 ~ 11498621 (+)
G9656 NA non-coding upstream 174317 11407983 ~ 11408234 (+)
G9643 NA non-coding upstream 220256 11362044 ~ 11362295 (+)
G9730 NA non-coding downstream 36843 11621002 ~ 11621408 (+)
G9770 spc24 non-coding downstream 170904 11755063 ~ 11759793 (+)
G9787 NA non-coding downstream 253481 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 532858 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 567746 12151905 ~ 12198169 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 144219 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1552961 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 1970739 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2651546 8919829 ~ 8931005 (+)
G9113 NA other upstream 2772084 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 718368 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 943530 12527689 ~ 12600530 (+)
G10003 NA other downstream 1029532 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1190054 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1550442 13134601 ~ 13135118 (+)

Expression


Co-expression Network