G9770 (spc24)


Basic Information

Item Value
gene id G9770
gene name spc24
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 11755063 ~ 11759793 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13255
GGCGGCAGAACATTTGTGGTGGGTTTAATGggccacactcacacaccaatCACCAGCATGcctgttttaacattttaatatttaacagcAGTAATACAAAAGACAGAACattaaaatgtgcaatttaaagaGAAGGAAAGTCATATAAATGCAACTGTCCATAAGATAATGGTGATATTAGGGATATAATTATCATAAAGTCTGAAAGGaataacacaaacatacatacacagtaCTATCATACATTTCAGGCTATTATATACAAcacatatttagaaaaaaagaaagaaatttgcTAAAGGACAGAAAATCAAGGATTCTCCAATAGTCCAGTGAAGTTCTACCAGTCCGTGCTGACCAGGCTCCACAGCTCATCACTGACCTCACATGGAGAACGGGTTGATGTGTCTATGTTGATGGGGGTTGCCAGATTTGTACCATAATGGGCTCCCCGCAGTATGTGTGGTTCTGTGTTCAGCTCCAGTTTGATTTTGGTAACTTTAAAGTAGAGTTGAGCCAAGTATATGGCTGAGGGAATGACTTCTGTGGTGTCCTCATCCACTTCCTGTTGGAGAGTTTGTATTTCCTGCTCGTTCTCCTTAAGTCTCTGCAGCTCATTCTGTAGGAATTGTATCTCTGAGTCCAGCGTGTGGCTCTTCCTCAGACTCAGCTGCACCTCCTGCTCCACACTCTCCAGCTCTCGCATCATCTGACTCTTCTGACTCTCCATGCCCAGaagcttatggcctacaaactCCTCAGACTGCACCAGGCTGTTTAAGAGGTGAGTGACCGTCCTCTTGGCCTCTGTGTGGTGGTCAAACAGAGCTTGCTGCTTGTTCCTCGCTGCCCTCAGAGCATCTTCAGCTTTACTGCTCTCAATGAGCTCGATGAGCGCCTCTCCTGTGTTCTCCAGGTCAACATAATGTAAAGCGTCGTTCtgtagcatgttctcctcttgCTGAGTTTACAAAGTTCCTTCCCCTTCTGCAGCTCTGTTTTCAAACCGGGCCGCTCATTCCC

Function

symbol description
spc24 Predicted to act upstream of or within cell division. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Orthologous to human SPC24 (SPC24 component of NDC80 kinetochore complex).

NR:

description
kinetochore protein Spc24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13255 True 1023 lncRNA 0.45 6 11755063 11759793

Neighbor

gene id symbol gene type direction distance location
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding upstream 4854 11744412 ~ 11750209 (+)
LOC103045592 NA coding upstream 123163 11623683 ~ 11631900 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding upstream 132721 11606124 ~ 11622342 (+)
ankrd54 ankrd54 coding upstream 149569 11598303 ~ 11605494 (+)
foxred2 foxred2,LOC107703880,LOC107559237,LOC107719334,LOC107728836 coding upstream 157735 11586489 ~ 11597328 (+)
LOC103023317 LOC108432209,LOC108260824 coding downstream 122938 11882731 ~ 11917275 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding downstream 183925 11943718 ~ 12070412 (+)
gaa LOC106601771 coding downstream 523477 12283270 ~ 12301714 (+)
LOC103031044 NA coding downstream 692110 12451903 ~ 12463253 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding downstream 708857 12468650 ~ 12471254 (+)
G9730 NA non-coding upstream 133655 11621002 ~ 11621408 (+)
G9727 NA non-coding upstream 170904 11582551 ~ 11584159 (+)
G9708 NA non-coding upstream 205932 11548182 ~ 11549131 (+)
G9688 NA non-coding upstream 249173 11499079 ~ 11505890 (+)
G9686 NA non-coding upstream 256442 11495734 ~ 11498621 (+)
G9787 NA non-coding downstream 77847 11837640 ~ 11842193 (+)
G9851 NA non-coding downstream 357224 12117017 ~ 12117343 (+)
G9852 NA non-coding downstream 392112 12151905 ~ 12198169 (+)
G9856 NA non-coding downstream 463907 12223700 ~ 12224690 (+)
G9861 tnpo2,LOC108432206 non-coding downstream 505985 12265778 ~ 12272921 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 316731 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 1725473 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2143251 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 2824058 8919829 ~ 8931005 (+)
G9113 NA other upstream 2944596 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 542734 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 767896 12527689 ~ 12600530 (+)
G10003 NA other downstream 853898 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 1014420 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 1374808 13134601 ~ 13135118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04370706_04374491 SPC24 coding CI01000034 null 4370626 ~ 4375413 (-)