G9852


Basic Information

Item Value
gene id G9852
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12151905 ~ 12198169 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13365
TGTTTATTGTGAAGAGACACTGATTGTCAATTAAACGAACAGCTTTGCATGCAGAGATTATCTGACaggctttaaaaaacacaaagacacacatcACCCTTATATACGGACAGGATGAACTCTGGGAGGAAGGCACATTTTTCTTTCGTTTAGTTTTATCATTCGTTATCAGTGAATATTGTACAGTAACACACATCTGCTCATGACTTTCAACCTTCTGCAATTAAACCATGAAGAACCATGAAGGAACAGATGtggcttaaaataaaacagaagaaaGTTTGAAGATATTGAGCATGTTTAGATGCACTTCAGAATCTGATTACTATTTGTTATCTGACCAACTCATTTAAATGAATTTAGATAATCAGTTTACGAGTCGAAATAAAAATCAGATGTTGGGCTTTCAGTCaaaaaacaagcataatATAAACTTTTCTGAccattttaatttctaaaaaagaA
>TU13366
TGTTTATTGTGAAGAGACACTGATTGTCAATTAAACGAACAGCTTTGCATGCAGAGATTATCTGACaggctttaaaaaacacaaagacacacatcACCCTTATATACGGACAGGATGAACTCTGGGAGGAAGGCACATTTTTCTTTCGTTTAGTTTTATCATTCGTTATCAGTGAATATTGTACAGTAACACACATCTGCTCATGACTTTCAACCTTCTGCAATTAAACCATGAAGAACCATGAAGGAACAGATGtggcttaaaataaaacagaagaaaGTTTGAAGATATTGAGCATGTTTAGATGCACTTCAGAATCTGATTACTATTTGTTATCTGACCAACTCATTTAAATGAATTTAGATAATCAGTTTACGAGTCGAAATAAAAATCAGATGTTGGGCTTTCAGTCAAAAATCTCAGAATAAGACTTAAACATCAGATAAAAcccgaacttaaaaaaaaacaaacaaaaaaacaagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU13365 False 465 lncRNA 0.33 2 12151905 12152435
TU13366 True 484 lncRNA 0.33 2 12151905 12198169

Neighbor

gene id symbol gene type direction distance location
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding upstream 81493 11943718 ~ 12070412 (+)
LOC103023317 LOC108432209,LOC108260824 coding upstream 234630 11882731 ~ 11917275 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding upstream 401696 11744412 ~ 11750209 (+)
LOC103045592 NA coding upstream 520005 11623683 ~ 11631900 (+)
hmgxb4 hmgxb4,LOC106607053,LOC106601319 coding upstream 529563 11606124 ~ 11622342 (+)
gaa LOC106601771 coding downstream 85101 12283270 ~ 12301714 (+)
LOC103031044 NA coding downstream 253734 12451903 ~ 12463253 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding downstream 270481 12468650 ~ 12471254 (+)
LOC111188181 LOC108432168 coding downstream 276048 12474217 ~ 12484578 (+)
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 697727 12895896 ~ 13001095 (+)
G9851 NA non-coding upstream 34562 12117017 ~ 12117343 (+)
G9787 NA non-coding upstream 309712 11837640 ~ 11842193 (+)
G9770 spc24 non-coding upstream 392112 11755063 ~ 11759793 (+)
G9730 NA non-coding upstream 530497 11621002 ~ 11621408 (+)
G9727 NA non-coding upstream 567746 11582551 ~ 11584159 (+)
G9856 NA non-coding downstream 25531 12223700 ~ 12224690 (+)
G9861 tnpo2,LOC108432206 non-coding downstream 67609 12265778 ~ 12272921 (+)
G9868 tnpo2,LOC104950577,LOC103360699,LOC108432206 non-coding downstream 76671 12274840 ~ 12276812 (+)
G9870 tnpo2,LOC108432206,LOC105910653,LOC106601762 non-coding downstream 79370 12277539 ~ 12280340 (+)
G9918 NA non-coding downstream 146451 12344620 ~ 12348777 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 713573 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 2122315 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2540093 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 3220900 8919829 ~ 8931005 (+)
G9113 NA other upstream 3341438 8809701 ~ 8810467 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other downstream 104358 12302527 ~ 12381348 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 329520 12527689 ~ 12600530 (+)
G10003 NA other downstream 415522 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 576044 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 936432 13134601 ~ 13135118 (+)

Expression


Co-expression Network