tbc1d16 (tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097)


Basic Information

Item Value
gene id tbc1d16
gene name tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12302527 ~ 12381348 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13435
cataaacacacacatagaggAGCTCAGAGTGCGGGCTGTTCCTCTACGGTAACACTAGTTTTACTGGAGAGAATTAGCGTTAATATGGACGAGCGGCAGGCTGTGTAATTCCCTCAGGAGCTGaagaggaTGGGAGCAGGACCCTGGAGCTGGAGATGTCATTTGGTCGACTCCTGCGACGCGCTTCCTCCAAAGCCTCTGACCTCCTGACTTTTAATGCGGGATCGCGGTCCGTGCTGGACGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTGCACCCGGCCGAGCCCCTGCCTGGCCTTCCGGAACACCATCCAGGTTACCTGTGTGTGCACCTGGAGAAGGACGAGACCCTGGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCTCTGCGCTACATCACCCCCGAGAGCTCTCCGGTACGCCGTAACCCTCGCCGCCGCACCCACCCACCACAGCCCC
>XM_022673758.1
GAGCAGCAGCGGCGTGTCCAGGCgaaggtgcacacacacataaacacacacatagaggAGCTCAGAGTGCGGGCTGTTCCTCTACGGTAACACTAGTTTTACTGGAGAGAATTAGCGTTAATATGGACGAGCGGCAGGCTGTGTAATTCCCTCAGGAGCTGaagaggaTGGGAGCAGGACCCTGGAGCTGGAGATGTCATTTGGTCGACTCCTGCGACGCGCTTCCTCCAAAGCCTCTGACCTCCTGACTTTTAATGCGGGATCGCGGTCCGTGCTGGACGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTGCACCCGGCCGAGCCCCTGCCTGGCCTTCCGGAACACCATCCAGGTTACCTGTGTGTGCACCTGGAGAAGGACGAGACCCTGGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCTCTGCGCTACATCACCCCCGAGAGCTCTCCGGTACGCCGTAACCCTCGCCGCCGCACCCACCCACCACAGCCCCGCCCACCACCCGCCccggaggaagaggaggacgaggaggcgggAGGGGAGCCCAACCTGGGGCAGCTGCAGCTGGAGGACGGGGACGAGGGCTCGTGCGAGCTCTCTGCGGACGAGGTGAGCCGGGACAGCACGCTGGGGTCCGACTCGGACACGTTCTCCTCGCCCTTCTGCCTGTCCCCCGTCAGCGAGGCGCTCGGAGAGAGCACCAGCTCCGTCTTCCTCGACAACGAGAGCAGGGAGATGTGTGATGAGTCCATGACTCACTCTGCAAGCTCCGCCTCCAGCTTGGACAGCCACGCCCCCTCGGAGAGCAGCCAATCGCAGGGCGTCCGGTGGGAGGAGCAGCAGAAGGTTCTGGCCCTAGAGCAGCTGTGCGGCGTGTTCAGAGTGGACCTCGGCCACATGAGGTCACTACGACTCTTCTTCAGTGATGAGGCGTGTACCTGTGGTCAGCTGGTCATCGCCAGCAGAGAGAGTCAGTATAAGATCCTGCACTTCCACCACGCCGGCCTGGACAAGCTGGCTGAAGTCTTCCAGCAGTGGAAATGCTGCAGAGAGACGCAGCTCAAAGACCAGGTGGCGGATGAGAAGTCCTGCATGCAGTTCTCTATACGCAGACCCACCCTGCCCTCGACCGAGACCCACCCGGAGGAGCGGCTGTACCGCAGGCTGGACGTCAGCTCCTGGCTCCGGCACCTCAACCACAGCGGCCAGGTGGAGGAGGAGTACAAGCTCAGGAAGGCGATCTTTTTCGGAGGAATTGACCCGTCCATCCGGGGGGAGGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCACCTCCGAGGAGCGCGAGGCCTGGAGGCTGCAGAAACGCAGCGAGTACCAGGAGATCCAGCAGAGGAGgttGTCGATGAGTCCTGAGGAGCACAGTGAGTTCTGGAGGAAGGTGCAGTTTACAGTAGATAAGGACGTGGTGAGGACTGATAGGAGCAACATGTTCTTCAGAGGAGAGAACAACCCTAACGTGGAGATCATGAGGCGTATCTTGTTGAACTATGCAGTGTTTAATCCGGAGATGGGCTACTGTCAGGGCATGTCCGACCTGGTGGCTCCTCTGCTGACTGAGATCCAGGATGAGAGTGATACGTTCTGGTGCTTCGTGGGCTTGATGGAGaacaccatcttcatcagctcCCCGAGGGACGAGGACATGGAGAGACAACTGATGTATCTGAGGGAGCTCCTGAGGCTCATGCTCCCTCGATTCCACCAGCACCTGATGCGTTTGGGAGAGGACGGGCTGCAGCTGCTGTTCTGCCACCGCTGGGTTCTGCTCTGTTTCAAGCGCGAGTTCCCCGACATGGAGGCCCTGCGAATGTGGGAAGCCTGCTGGGCTCATTACCAGACGGACTACTTCCACCTCTTCCTGTGTGTGGCCATCATTATGCTGTACGGTGATGATGTCACAGAGCAACAGCTAGCAACCGATCAGATGCTGCTGCATTTTAGCAATCTCTCAATGCACATGAACGGAGAACTGGTGCTGAGGAAGGCCCGGAGTCTCCTCTATCAGTTCCGACTGCTTCCCAGAATCCCCTGCAGTCTGCATGACCTGTGTAAGCTGTGTGGGCCGGGCATGTGGGACAGCCGCTACATCCCCGCAGTCGAATGTTCCGGAGAGCACCCGGACTCTCAGAGCTGCCCCTATGGAGGCACAGCCACCCCCCAGCCGCCCCCGTCCCCCAGCCAGCCCGTCGAGAGCAAGCGCGGCTCCAAGACCCGGGACATCTTCAACTTCCGCAAGCAGTCCTGACTGCGGGACTGCAGCCGGGCTTCAGGACTACACTACCCACAAGGCCTAGCCCCAAGGGGAACCATTCGCCAGGTACACACAGGTGAATGCTGGGAGACTCCGGGAGACCTCAGCGTGGTTATTGATTACTGATTAGGAGATTACTGATTTGCAGTCGAGTATGATATGGAACACtgcctaataataaaataataataaaaaaaaaacaaatacaccacatttcagtttaaaatgacaCTTTAAACTGACATATCAGTGTTTGAACGGAAGGAaaactttctctttctttatcgaATGAAGGGAATGGGATGAGCATTGGTGCTCAAATTCCCGTCAAACATAATAGAAGGATTCTTACGGAATGGGATCCCATCCCATATGGAGGCACAGAAGGATTGGATTACAGAATGTCATCAATAATACACGAGCAGTATCCTCGCATACAAACAACAAAGGATTACAATCTCCtccttctttatttttaacaaatccAATATATTGATACTCTTTAATACTATTTTTCTCCTTTTGTTTTGTATCCAAGACAGTACGCATGTGTGTAAGCGTGTATACGTGTCCTGAGTACATGAGTGCGAGTTATGCTTGAGTTAAACTGCTGCATATGAAGAAATCTGCCTTCAGTAATGGGCTGAAACGTTAGGCTATCTCAGTTATGAAGCTTCTTCGTGAGGAAGCTCTTATTGCACTGTAGTTTATAGGCTGCGATCATTTCCACAGCAGGTAAAAATGGCCCAAATCCGTTAGATTTTGACACAGATGtggcaaaaaatacaatacatatcTGATGAACTAGATCATGTCgaggtgaagtaaaaaaaaaaaaaaaactacaggggttggacaatgaaactgaaacgcctggttttagaccacaat
>XR_002650462.1
GAGCAGCAGCGGCGTGTCCAGGCgaaggtgcacacacacataaacacacacatagaggAGCTCAGAGTGCGGGCTGTTCCTCTACGGTAACACTAGTTTTACTGGAGAGAATTAGCGTTAATATGGACGAGCGGCAGGCTGTGTAATTCCCTCAGGAGCTGaagaggaTGGGAGCAGGACCCTGGAGCTGGAGATGTCATTTGGTCGACTCCTGCGACGCGCTTCCTCCAAAGCCTCTGACCTCCTGACTTTTAATGCGGGATCGCGGTCCGTGCTGGACGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTGCACCCGGCCGAGCCCCTGCCTGGCCTTCCGGAACACCATCCAGGTTACCTGTGTGTGCACCTGGAGAAGGACGAGACCCTGGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCTCTGCGCTACATCACCCCCGAGAGCTCTCCGGTACGCCGTAACCCTCGCCGCCGCACCCACCCACCACAGCCCCGCCCACCACCCGCCccggaggaagaggaggacgaggaggcgggAGGGGAGCCCAACCTGGGGCAGCTGCAGCTGGAGGACGGGGACGAGGGCTCGTGCGAGCTCTCTGCGGACGAGGTGAGCCGGGACAGCACGCTGGGGTCCGACTCGGACACGTTCTCCTCGCCCTTCTGCCTGTCCCCCGTCAGCGAGGCGCTCGGAGAGAGCACCAGCTCCGTCTTCCTCGACAACGAGAGCAGGGAGATGTGTGATGAGTCCATGACTCACTCTGCAAGCTCCGCCTCCAGCTTGGACAGCCACGCCCCCTCGGAGAGCAGCCAATCGCAGGGCGTCCGGTGGGAGGAGCAGCAGAAGGTTCTGGCCCTAGAGCAGCTGTGCGGCGTGTTCAGAGTGGACCTCGGCCACATGAGGTCACTACGACTCTTCTTCAGTGATGAGGCGTGTACCTGTGGTCAGCTGGTCATCGCCAGCAGAGAGAGTCAGTATAAGATCCTGCACTTCCACCACGCCGGCCTGGACAAGCTGGCTGAAGTCTTCCAGCAGTGGAAATGCTGCAGAGAGACGCAGCTCAAAGACCAGGTGGCGGATGAGAAGTCCTGCATGCAGTTCTCTATACGCAGACCCACCCTGCCCTCGACCGAGACCCACCCGGAGGAGCGGCTGTACCGCAGGCTGGACGTCAGCTCCTGGCTCCGGCACCTCAACCACAGCGGCCAGGTGGAGGAGGAGTACAAGCTCAGGAAGGCGATCTTTTTCGGAGGAATTGACCCGTCCATCCGGGGGGAGGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCACCTCCGAGGAGCGCGAGGCCTGGAGGCTGCAGAAACGCAGCGAGTACCAGGAGATCCAGCAGAGGAGgttGTCGATGAGTCCTGAGGAGCACAGTGAGTTCTGGAGGAAGGTGCAGTTTACAGTAGATAAGGACGTGGTGAGGACTGATAGGAGCAACATGTTCTTCAGAGGAGAGAACAACCCTAACGTGGAGATCATGAGGCGTATCTTGTTGAACTATGCAGTGTTTAATCCGGAGATGGGCTACTGTCAGGGCATGTCCGACCTGGTGGCTCCTCTGCTGACTGAGATCCAGGATGAGAGTGATACGTTCTGGTGCTTCGTGGGCTTGATGGAGaacaccatcttcatcagctcCCCGAGGGACGAGGACATGGAGAGACAACTGATGTATCTGAGGGAGCTCCTGAGGCTCATGCTCCCTCGATTCCACCAGCACCTGATGCGTTTGGGAGAGGACGGGCTGCAGCTGCTGTTCTGCCACCGCTGGGTTCTGCTCTGTTTCAAGCGCGAGTTCCCCGACATGGAGGCCCTGCGAATGTGGGAAGCCTGCTGGGCTCATTACCAGACGGACTACTTCCACCTCTTCCTGTGTGTGGCCATCATTATGCTGTACGGTGATGATGTCACAGAGCAACAGCTAGCAACCGATCAGATGCTGCTGCATTTTAGCAATCTCTCAATGCACATGAACGGAGAACTGGTGCTGAGGAAGGCCCGGAGTCTCCTCTATCAGTTCCGACTGCTTCCCAGAATCCCCTGCAGTCTGCATGACCTGTGTAAGCTGTGTGGGCCGGGCATGTGGGACAGCCGCTACATCCCCGCAGTCGAATGTTCCGGAGAGCACCCGGACTCTCAGAGCTGCCCCTATGGAGGCACAGCCACCCCCCAGCCGCCCCCGTCCCCCAGCCAGCCCGTCGAGAGCAAGCGCGGCTCCAAGACCCGGGACATCTTCAACTTCCGCAAGCAGTCCTGACTGCGGGACTGCAGCCGGGCTTCAGGACTACACTACCCACAAGGCCTAGCCCCAAGGGGAACCATTCGCCAGGTACACACAGAGGCCTACAGCACTGTCATTGCAGCCATCGCTTCAATGACGACCACGAACGATTGTCGACCGTTCTTCACCTTAGTTTGAACCGTATCCTGTACAATTTCATTATGATTTtgcaaataaaatgaataataattatgCA
>XR_002650463.1
GAGCAGCAGCGGCGTGTCCAGGCgaaggtgcacacacacataaacacacacatagaggAGCTCAGAGTGCGGGCTGTTCCTCTACGGTAACACTAGTTTTACTGGAGAGAATTAGCGTTAATATGGACGAGCGGCAGGCTGTGTAATTCCCTCAGGAGCTGaagaggaTGGGAGCAGGACCCTGGAGCTGGAGATGTCATTTGGTCGACTCCTGCGACGCGCTTCCTCCAAAGCCTCTGACCTCCTGACTTTTAATGCGGGATCGCGGTCCGTGCTGGACGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTGCACCCGGCCGAGCCCCTGCCTGGCCTTCCGGAACACCATCCAGGTTACCTGTGTGTGCACCTGGAGAAGGACGAGACCCTGGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCTCTGCGCTACATCACCCCCGAGAGCTCTCCGGTACGCCGTAACCCTCGCCGCCGCACCCACCCACCACAGCCCCGCCCACCACCCGCCccggaggaagaggaggacgaggaggcgggAGGGGAGCCCAACCTGGGGCAGCTGCAGCTGGAGGACGGGGACGAGGGCTCGTGCGAGCTCTCTGCGGACGAGGTGAGCCGGGACAGCACGCTGGGGTCCGACTCGGACACGTTCTCCTCGCCCTTCTGCCTGTCCCCCGTCAGCGAGGCGCTCGGAGAGAGCACCAGCTCCGTCTTCCTCGACAACGAGAGCAGGGAGATGTGTGATGAGTCCATGACTCACTCTGCAAGCTCCGCCTCCAGCTTGGACAGCCACGCCCCCTCGGAGAGCAGCCAATCGCAGGGCGTCCGGTGGGAGGAGCAGCAGAAGGTTCTGGCCCTAGAGCAGCTGTGCGGCGTGTTCAGAGTGGACCTCGGCCACATGAGGTCACTACGACTCTTCTTCAGTGATGAGGCGTGTACCTGTGGTCAGCTGGTCATCGCCAGCAGAGAGAGTCAGTATAAGATCCTGCACTTCCACCACGCCGGCCTGGACAAGCTGGCTGAAGTCTTCCAGCAGTGGAAATGCTGCAGAGAGACGCAGCTCAAAGACCAGGTGGCGGATGAGAAGTCCTGCATGCAGTTCTCTATACGCAGACCCACCCTGCCCTCGACCGAGACCCACCCGGAGGAGCGGCTGTACCGCAGGCTGGACGTCAGCTCCTGGCTCCGGCACCTCAACCACAGCGGCCAGGTGGAGGAGGAGTACAAGCTCAGGAAGGCGATCTTTTTCGGAGGAATTGACCCGTCCATCCGGGGGGAGGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCACCTCCGAGGAGCGCGAGGCCTGGAGGCTGCAGAAACGCAGCGAGTACCAGGAGATCCAGCAGAGGAGgttGTCGATGAGTCCTGAGGAGCACAGTGAGTTCTGGAGGAAGGTGCAGTTTACAGTAGATAAGGACGTGGTGAGGACTGATAGGAGCAACATGTTCTTCAGAGGAGAGAACAACCCTAACGTGGAGATCATGAGGCGTATCTTGTTGAACTATGCAGTGTTTAATCCGGAGATGGGCTACTGTCAGGGCATGTCCGACCTGGTGGCTCCTCTGCTGACTGAGATCCAGGATGAGAGTGATACGTTCTGGTGCTTCGTGGGCTTGATGGAGaacaccatcttcatcagctcCCCGAGGGACGAGGACATGGAGAGACAACTGATGTATCTGAGGGAGCTCCTGAGGCTCATGCTCCCTCGATTCCACCAGCACCTGATGCGTTTGGGAGAGGACGGGCTGCAGCTGCTGTTCTGCCACCGCTGGGTTCTGCTCTGTTTCAAGCGCGAGTTCCCCGACATGGAGGCCCTGCGAATGTGGGAAGCCTGCTGGGCTCATTACCAGACGGACTACTTCCACCTCTTCCTGTGTGTGGCCATCATTATGCTGTACGGTGATGATGTCACAGAGCAACAGCTAGCAACCGATCAGATGCTGCTGCATTTTAGCAATCTCTCAATGCACATGAACGGAGAACTGGTGCTGAGGAAGGCCCGGAGTCTCCTCTATCAGTTCCGACTGCTTCCCAGAATCCCCTGCAGTCTGCATGACCTGTGTAAGCTGTGTGGGCCGGGCATGTGGGACAGCCGCTACATCCCCGCAGTCGAATGTTCCGGAGAGCACCCGGACTCTCAGAGCTGCCCCTATGGAGGCACAGCCACCCCCCAGCCGCCCCCGTCCCCCAGCCAGCCCGTCGAGAGCAAGCGCGGCTCCAAGACCCGGGACATCTTCAACTTCCGCAAGCAGTCCTGACTGCGGGACTGCAGCCGGGCTTCAGGACTACACTACCCACAAGGCCTAGCCCCAAGGGGAACCATTCGCCAGAGGCCTACAGCACTGTCATTGCAGCCATCGCTTCAATGACGACCACGAACGATTGTCGACCGTTCTTCACCTTAGTTTGAACCGTATCCTGTACAATTTCATTATGATTTtgcaaataaaatgaataataattatgCA

Function

symbol description
tbc1d16 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to be active in early endosome. Orthologous to human TBC1D16 (TBC1 domain family member 16).

NR:

description
TBC1 domain family member 16-like

GO: NA

KEGG:

id description
K24797 TBC1D16; TBC1 domain family member 16

RNA

RNA id representative length rna type GC content exon number start site end site
TU13435 False 495 TUCP 0.42 3 12302565 12316505
XM_022673758.1 True 3232 mRNA 0.54 12 12302527 12365097
XR_002650462.1 False 2555 misc_RNA 0.59 13 12302527 12381348
XR_002650463.1 False 2545 misc_RNA 0.59 13 12302527 12381348

Neighbor

gene id symbol gene type direction distance location
gaa LOC106601771 coding upstream 813 12283270 ~ 12301714 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding upstream 232115 11943718 ~ 12070412 (+)
LOC103023317 LOC108432209,LOC108260824 coding upstream 385252 11882731 ~ 11917275 (+)
LOC103046201 s1pr5a,LOC108432217,LOC107728470,LOC107658699,LOC107577264,LOC107758128,LOC107703889 coding upstream 552318 11744412 ~ 11750209 (+)
LOC103045592 NA coding upstream 670627 11623683 ~ 11631900 (+)
LOC103031044 NA coding downstream 70555 12451903 ~ 12463253 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding downstream 87302 12468650 ~ 12471254 (+)
LOC111188181 LOC108432168 coding downstream 92869 12474217 ~ 12484578 (+)
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 514548 12895896 ~ 13001095 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding downstream 1720518 14101866 ~ 14112197 (+)
G9870 tnpo2,LOC108432206,LOC105910653,LOC106601762 non-coding upstream 22187 12277539 ~ 12280340 (+)
G9868 tnpo2,LOC104950577,LOC103360699,LOC108432206 non-coding upstream 25715 12274840 ~ 12276812 (+)
G9861 tnpo2,LOC108432206 non-coding upstream 29606 12265778 ~ 12272921 (+)
G9856 NA non-coding upstream 77837 12223700 ~ 12224690 (+)
G9852 NA non-coding upstream 104358 12151905 ~ 12198169 (+)
G9999 NA non-coding downstream 204740 12586088 ~ 12589528 (+)
LOC111193353 NA non-coding downstream 215049 12596397 ~ 12597719 (+)
G10001 slc5a11,LOC107670676,LOC107728787 non-coding downstream 227617 12608965 ~ 12610876 (+)
G10010 NA non-coding downstream 276257 12657605 ~ 12658147 (+)
G9993 NA non-coding downstream 288725 12670073 ~ 12670422 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 864195 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 2272937 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 2690715 9499833 ~ 9611812 (+)
bri3 bri3 other upstream 3371522 8919829 ~ 8931005 (+)
G9113 NA other upstream 3492060 8809701 ~ 8810467 (+)
arhgap17 LOC108432202,LOC108279379 other downstream 146341 12527689 ~ 12600530 (+)
G10003 NA other downstream 232343 12613691 ~ 12618197 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 392865 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 753253 13134601 ~ 13135118 (+)
G10362 LOC108427334 other downstream 1633004 14014352 ~ 14020095 (+)

Expression


Co-expression Network