G10003


Basic Information

Item Value
gene id G10003
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 12613691 ~ 12618197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13546
GTTCCATTCATACGCAGTCGGGCCAATGCCGGATGCAGCCCCCGACCCAGCCAGCCCAATGAAGTGACCACTGCCCACGTTACTGGCAAACAGAGACGTTCCCACCTGCAGACAGAGCACAGCAATCAGACCTCAACCCTTCATCTGTGTGTACATTATTAAGATCAAAAATATTAAGATAGTAaagattaatattatataaaaaaagaaagaattagaAACTTTAGGACTCACCGGCCACCAGGTCATGTTCTTGCCTGCCAAGAAATATCCACTCACTGTGCTCCTCTTGGTTTTCCACATAGACTTGAAATCAGTCAgtcaatatataaaaataaatcagtgcACAGTAGAAatgcagatataaaaaaattatatatttttttaaaataaaagttaaacatattaatGATAGAAAAGTTGCTAcagttttaagtaaaaaaaattcaacctaccgtatttttcgcactataaggcacacaagattataaggcgcattacgCAACACTAATAAGAAACAGGGTGTCGCCacgttttctttctaatttagcctgttaagctaagctaagtaaacaaaactgtaattcttaaaaaaacatcaaagtcaaatgagtgcaggatgttaatctacaccgatttctctcctgaatactgtttatttgggtgaagtgcttccgtttagtaacagtaagcttagatttccagatttctattaaggctgggtgcagcagcattagcatgagcGGCTAAcagtaaatgccacctgacgtactgtactacaatttttttttgcgtgttacaaatttactttaaatttgaaaaatgttgtaatttaatttactttctaaaaagttatatGATACAGTGCACTTTAAGTGAATTAgtgtaaaagttgtttttaacacactttgctaaaaatttacaaaagtatatttggaaataagtattttagaagggtattgaattacattaaactaaaagtgtccttcatagtagtctattttttaatacactatattgtatgATCagagtttactttcaaacatttgatgaaagcatattcgtacatgtttttaattttttttacctgggtTCTTTTAAAGAGTTCTGTAATCCAACACTATTCAACACATTTCTTTAATGATGAGCATATattaatacaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtttcatggttaaattggagcagcctggtggccaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagaacacagacaaattgttggtgcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgtatcaagagccacggtatccagggtaatgtcagcataccaccaagaaagaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaaaccagattgtatacaaaaaacataaaaaaacatggctgctcaaatcagagcagaatttaatgtgcacctcaactctcctgtttccacaagaactgtccgtcgggacaataaattattgtggtcttaaaccaggtgtttcagtttcattgtccaacccctgtatttttaGCAGTCTACTTTCTACACATACATTTTACTCTGTGTTTGGTTGTTTCCTGCTCTCCTCTACAGCTTTAATTACGAGAAAAATAGAACAGTTTCTTCATGTGCCATCATCAGaaattgaaatgtttttttttttcagacaggaAGTGGGTGTGGGAAGTGTGTAAGTCctctttttctgtattataAAGGAATAAACGTTTCAGCTCAGCCAGTGGAAGATGATCATTTCAGTGAGCGTGACAGATCAGTGAGTAAATCCACGCTTTATTCGCTGCAATGAAACGCACTGTGTGAGTCATCCCGCCGTAATTAATGATGTGAGGAAACGTTGTGAAGAAACCTACCCATAATCCCACTGCCAGGATCAAAAGGAAATACACAACCAGCACAGCTATATCTGCAGCAGGCAGCATCTGCGCCCCCTTTGAACCCCCTTCAGTGGGCGTCGGGGAGACACCAGGTATCTCTGTGCTCGCCATGGCGATCAGCCAGCAGCACGATTCACACTcagcGCTGAGGAGCTCAGAGACGGGGAACCGGTCTGAGTCTGAGGCTTCTATTCCAGAGCGTTCGCATGGCTCTACAGGCTGTGGTGCACTCACCCTTCGGACGCTCGTAGCGCCGTCATGCTGCCTAGAAGCTGCTGTAGGGATCAAACTCCATCATTCCTCCACTCCTTATATAAgaccacacacgcacacatgctg

Function

GO:

id name namespace
GO:0003884 D-amino-acid oxidase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00472 D-Arginine and D-ornithine metabolism
ko00311 Penicillin and cephalosporin biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU13546 True 2373 TUCP 0.41 2 12613691 12618197

Neighbor

gene id symbol gene type direction distance location
LOC111188181 LOC108432168 coding upstream 129113 12474217 ~ 12484578 (+)
LOC103029671 cbx8,LOC108432169,LOC102784560 coding upstream 142437 12468650 ~ 12471254 (+)
LOC103031044 NA coding upstream 150438 12451903 ~ 12463253 (+)
gaa LOC106601771 coding upstream 311977 12283270 ~ 12301714 (+)
LOC103025257 grin2c,LOC100329743,LOC107758122,LOC107658706,LOC107559244 coding upstream 543279 11943718 ~ 12070412 (+)
mybpc2 mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 277699 12895896 ~ 13001095 (+)
LOC103034911 LOC103034911,LOC108280870,LOC108427336 coding downstream 1483669 14101866 ~ 14112197 (+)
LOC111194173 NA coding downstream 1583154 14201351 ~ 14213960 (+)
LOC103039204 NA coding downstream 1606986 14225183 ~ 14230983 (+)
LOC103036166 LOC108427338 coding downstream 1614032 14232229 ~ 14242075 (+)
G10001 slc5a11,LOC107670676,LOC107728787 non-coding upstream 2815 12608965 ~ 12610876 (+)
LOC111193353 NA non-coding upstream 15972 12596397 ~ 12597719 (+)
G9999 NA non-coding upstream 24163 12586088 ~ 12589528 (+)
G9918 NA non-coding upstream 264914 12344620 ~ 12348777 (+)
G9870 tnpo2,LOC108432206,LOC105910653,LOC106601762 non-coding upstream 333351 12277539 ~ 12280340 (+)
G10010 NA non-coding downstream 39408 12657605 ~ 12658147 (+)
G9993 NA non-coding downstream 51876 12670073 ~ 12670422 (+)
G10045 NA non-coding downstream 96659 12714856 ~ 12781025 (+)
G10063 tbc1d17,LOC107563983,LOC107680857,LOC107732891,LOC107687627 non-coding downstream 167675 12785872 ~ 12789199 (+)
G10065 tbc1d17,LOC107732891,LOC107680857,LOC107563983,LOC107687627 non-coding downstream 177940 12796137 ~ 12806916 (+)
arhgap17 LOC108432202,LOC108279379 other upstream 13161 12527689 ~ 12600530 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324,LOC107758097 other upstream 232343 12302527 ~ 12381348 (+)
luc7l3 luc7l3,LOC107674472,LOC107726809,LOC107654661 other upstream 1175359 11429073 ~ 11438332 (+)
LOC111193317 gas7,LOC108412615,LOC108260882,LOC107755169,LOC107555645,LOC105910950 other upstream 2584101 9979075 ~ 10029590 (+)
LOC103034760 LOC108412745,LOC108274115,LOC107724740,LOC107713951,LOC107584184,LOC103382335,LOC100706789,LOC102782950,LOC103361753 other upstream 3001879 9499833 ~ 9611812 (+)
akt1s1 akt1s1,LOC107564011,LOC107680841 other downstream 156016 12774213 ~ 12821991 (+)
G10200 LOC107747660 other downstream 516404 13134601 ~ 13135118 (+)
G10362 LOC108427334 other downstream 1396155 14014352 ~ 14020095 (+)
G10450 LOC103035240,LOC108427335,LOC107732842,LOC107674167,LOC107563993,LOC107732871,LOC107658445,LOC107729508,LOC108280773 other downstream 1499415 14117612 ~ 14164106 (+)
LOC111193423 arl6ip1,LOC107658451 other downstream 1696595 14314792 ~ 14398695 (+)

Expression


Co-expression Network