G10139


Basic Information

Item Value
gene id G10139
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 13025013 ~ 13025296 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU13729
ttccaccttaaataacgctacaggtggcagcgggctgcagcatttaaggcggaacggaaaaataacaataagctaatcagagctaatttcagctcctcatcacagaggaattaaggaatggacaatatgaattaatttctccacctcctgccccctttctgaagaaatacaacggcctaaaattaactagttaatcagcagctgctcctgaactttagcgctccactgctatcatcacatcagcccagcagcgtcacctacacaccaccgctagtagccttata

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU13729 True 284 lncRNA 0.45 1 13025013 13025296

Neighbor

gene id symbol gene type direction distance location
emc10 emc10,LOC107551156,LOC107729566,LOC107687623 coding downstream 136032 12876778 ~ 12888981 (-)
LOC111193363 LOC108434907 coding downstream 160238 12826988 ~ 12864775 (-)
tbc1d17 tbc1d17,LOC107687627,LOC107729504,LOC107680857,LOC107551157,LOC107563983 coding downstream 218099 12778323 ~ 12806914 (-)
LOC111193357 LOC108434909 coding downstream 257382 12761269 ~ 12767631 (-)
LOC103046537 nucb1,LOC108434929,LOC107687629,LOC107729549,LOC107732899,LOC107563981 coding downstream 265343 12742351 ~ 12759670 (-)
LOC111193378 NA coding upstream 67907 13093203 ~ 13096456 (-)
med25 med25 coding upstream 312705 13338001 ~ 13387939 (-)
syt3 syt3,LOC107551154,LOC107563990 coding upstream 398730 13424026 ~ 13540925 (-)
LOC103033311 si:ch211-51c14.1,LOC108427330,LOC107732900,LOC107729493,LOC107551153,LOC105012945,LOC106595301 coding upstream 606483 13631779 ~ 13671682 (-)
LOC103038885 shank1,LOC108427331,LOC107732841 coding upstream 658583 13683879 ~ 13964838 (-)
LOC111194169 NA non-coding downstream 7537 13013337 ~ 13017476 (-)
G10137 NA non-coding downstream 16601 13005144 ~ 13008412 (-)
G10130 NA non-coding downstream 22443 13001400 ~ 13002570 (-)
G10129 mybpc2a,LOC107551135,LOC107729557 non-coding downstream 23757 12997974 ~ 13001256 (-)
G10122 NA non-coding downstream 129727 12894836 ~ 12895286 (-)
G10142 NA non-coding upstream 4329 13029625 ~ 13038098 (-)
G10145 NA non-coding upstream 20132 13045428 ~ 13045639 (-)
G10151 NA non-coding upstream 33479 13058775 ~ 13059046 (-)
G10153 NA non-coding upstream 33826 13059122 ~ 13059378 (-)
G10157 NA non-coding upstream 41825 13067121 ~ 13067739 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 207827 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 1346905 11676154 ~ 11678108 (-)
G9632 atp5h,LOC103042933,LOC103361245,LOC107670447 other downstream 1680751 11340140 ~ 11344262 (-)
G9469 NA other downstream 2629533 10393462 ~ 10395480 (-)
LOC111194270 NA other downstream 2799523 10221156 ~ 10225490 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other upstream 124061 13149357 ~ 13292878 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other upstream 1013562 14038858 ~ 14083107 (-)
G10560 NA other upstream 1215765 14241061 ~ 14243794 (-)
hsd3b7 hsd3b7,LOC106601563 other upstream 1594080 14619376 ~ 14656561 (-)
LOC103040656 LOC108427315 other upstream 1762774 14788070 ~ 14797643 (-)

Expression


Co-expression Network