hsd3b7 (hsd3b7,LOC106601563)


Basic Information

Item Value
gene id hsd3b7
gene name hsd3b7,LOC106601563
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14619376 ~ 14656561 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14289
CGCTGTTGCCTCTCAGAGAAGCTTAGACCAGCACCGACACAACACCCAGCAGCTCTCCGGCTCCGCTACACCTCCACTAGTCTTCAGCATGTCCGCTCAGGAGCCGGGATTAGTGTATCTAATAACGGGAGGATGTGGATTTCTCGGGCAGCACCTGCTgcgagtcctgctggaaaaggagAGCAACCTGAAGGAGATCAGACTGTTCGATAAGCTCTCAGACCCCAGCCTGCAGAACCACAGCAcagaGCGGGTCAAGGTGGTGGTCATTCAGGGAGACATAACTGATTCCCAGTGTGTTCTGGATGCCTGCAGAGGAGCTGACCTGGTCATTCATGCTGCCAGCTTGGTGGATGTCTGGCACAGAGTGCCGGAGAAGACCATCCATGCCGTTAATGTAGGAGGTACAGAAAACGTTATAAACGCCTGTGTGGAGCTGGGTATTCAGCACTTGGTCTATACCAGCAGTATGGAGGTGGTGGGACCCAATGTAAAAGGAGACCACTTTGTCAGAGGAGATGAGGATACCCCTTATAAAATTTTCCATGAGATGCCGTACCCCAAGAGCAAAGCTGAAGCAGAGAAACTGGTGCTGGAAGCCAATGGCACAAAGTTAAATGGGGGTGGAATCCTGTACACATGTGCCCTGCGACCAACGGGTATCTATGGGGAAAACCACCAGTTGATGAAGGATTTCTACCAGATGGGGGTCCGCACTGGGGGCTGGCTGATTAGAGGAGTGCCCCAGGATACCGAGCATGGACGTGTGTATGCAGGTAA
>XM_022674222.1
ctcctccctTCACTCTGCAGAGCGAGAGAGCAGCGCTGTTGCCTCTCAGAGAAGCTTAGACCAGCACCGACACAACACCCAGCAGCTCTCCGGCTCCGCTACACCTCCACTAGTCTTCAGCATGTCCGCTCAGGAGCCGGGATTAGTGTATCTAATAACGGGAGGATGTGGATTTCTCGGGCAGCACCTGCTgcgagtcctgctggaaaaggagAGCAACCTGAAGGAGATCAGACTGTTCGATAAGCTCTCAGACCCCAGCCTGCAGAACCACAGCAcagaGCGGGTCAAGGTGGTGGTCATTCAGGGAGACATAACTGATTCCCAGTGTGTTCTGGATGCCTGCAGAGGAGCTGACCTGGTCATTCATGCTGCCAGCTTGGTGGATGTCTGGCACAGAGTGCCGGAGAAGACCATCCATGCCGTTAATGTAGGAGGTACAGAAAACGTTATAAACGCCTGTGTGGAGCTGGGTATTCAGCACTTGGTCTATACCAGCAGTATGGAGGTGGTGGGACCCAATGTAAAAGGAGACCACTTTGTCAGAGGAGATGAGGATACCCCTTATAAAATTTTCCATGAGATGCCGTACCCCAAGAGCAAAGCTGAAGCAGAGAAACTGGTGCTGGAAGCCAATGGCACAAAGTTAAATGGGGGTGGAATCCTGTACACATGTGCCCTGCGACCAACGGGTATCTATGGGGAAAACCACCAGTTGATGAAGGATTTCTACCAGATGGGGGTCCGCACTGGGGGCTGGCTGATTAGAGGAGTGCCCCAGGATACCGAGCATGGACGTGTGTATGCAGGTAAATAAATATGCAGAAAGGCTT

Function

symbol description
hsd3b7 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to act upstream of or within steroid biosynthetic process. Is expressed in several structures, including adenohypophysis; digestive system; lens; macrophage; and solid lens vesicle. Human ortholog(s) of this gene implicated in congenital bile acid synthesis defect 1 and intrahepatic cholestasis. Orthologous to human HSD3B7 (hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7).

NR:

description
3 beta-hydroxysteroid dehydrogenase type 7-like

GO: NA

KEGG:

id description
K12408 HSD3B7; cholest-5-ene-3beta,7alpha-diol 3beta-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
TU14289 False 780 TUCP 0.50 5 14619396 14656528
XM_022674222.1 True 833 mRNA 0.53 5 14619376 14656561

Neighbor

gene id symbol gene type direction distance location
smg1 smg1,LOC107729485 coding downstream 155392 14404597 ~ 14463984 (-)
LOC111193432 NA coding downstream 175613 14442704 ~ 14443763 (-)
arl6ip1 arl6ip1,LOC107658451 coding downstream 220679 14384234 ~ 14398697 (-)
LOC103036770 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 coding downstream 247868 14361634 ~ 14371508 (-)
LOC103037078 LOC103037078,LOC108427313 coding downstream 259285 14354352 ~ 14360091 (-)
LOC103040137 setd1a,LOC107737760,LOC107729457,LOC107658500,LOC107689688,LOC107582993 coding upstream 57030 14713591 ~ 14765570 (-)
fus fus,LOC103040960,LOC107658502,LOC107689689,LOC107554122 coding upstream 117140 14773701 ~ 14786659 (-)
kat8 kat8,LOC107554120,LOC107689650 coding upstream 156499 14813060 ~ 14821943 (-)
rnf25 rnf25,LOC107689710,LOC107554089 coding upstream 165809 14822370 ~ 14828329 (-)
LOC103040755 si:dkey-16l2.16,LOC108427354,LOC107729502,LOC107658507,LOC108280555,LOC107554119 coding upstream 174700 14831261 ~ 14847859 (-)
G10561 NA non-coding downstream 312846 14306272 ~ 14306530 (-)
G10430 NA non-coding downstream 597487 14021687 ~ 14021889 (-)
G10429 NA non-coding downstream 608963 14010176 ~ 14010413 (-)
G10413 NA non-coding downstream 701538 13917124 ~ 13917838 (-)
G10379 NA non-coding downstream 944083 13673955 ~ 13675293 (-)
G10595 NA non-coding upstream 36221 14692782 ~ 14694894 (-)
G10649 NA non-coding upstream 50772 14707333 ~ 14708613 (-)
G10654 NA non-coding upstream 114769 14771330 ~ 14771618 (-)
G10782 polr3d non-coding upstream 362730 15019291 ~ 15020115 (-)
LOC111194139 NA non-coding upstream 431310 15087871 ~ 15089128 (-)
G10560 NA other downstream 375582 14241061 ~ 14243794 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other downstream 536269 14038858 ~ 14083107 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 1326498 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 1802190 12813025 ~ 12817186 (-)
LOC103022087 foxd1,LOC103022087,LOC106569011,LOC108432165 other downstream 2941268 11676154 ~ 11678108 (-)
LOC103040656 LOC108427315 other upstream 131509 14788070 ~ 14797643 (-)
G10767 NA other upstream 266404 14922965 ~ 14923959 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other upstream 304271 14960832 ~ 14981569 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 616194 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 629115 15285676 ~ 15286735 (-)

Expression


Co-expression Network