G10649


Basic Information

Item Value
gene id G10649
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14707333 ~ 14708613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14368
caattaccgtatttttcggactataaggcgcaccgtattataagacgcactatcaaagaacgcctattttctgctatttttccatacatagggcgcatcgcattataaggcgcgttaagtgacactagaaagggtgcctatatcaaagtgaacaggggtggcgccatgtttcccttcccccaccgggggtggtcgcttgccggtggagcgtctcagtatatataaatctagctctttcaaagtcaaacgagtgctggatattaatctacacagattcctctcctgaaaactgtttatttgggtgagtaacgtgcttcagtttatttacagtaagcttagatttccagatgtccactaaggcttgctgcaccagcgttagcatagctatccgctagcacgctagctagtcacctaaactagtaaagttaacccaaacttaaacgacagcgttacactgagtaatcctgcgtgttctggtaagacagtgagatattagctagcgattcgtcccccgtagcttgttttaacacggtaaacaagcagattacaggctgataaaactcacctctgagagagttagcgcttagcatctagctaatgctagccaggcaaagcagcacagacttacaggccgataactcacctctgaacggtgaacgcttagcgattagcatctaactctaataatactgctccagcagtattaaaagtgctaaatttagaaaatactgatctctgaacagtgaaaaagctagctagctaagcggttagcatctagctaatgctattgctgctctgcacggagtgtgtgtttactgctccttacacctgacgggtaaaatttagataatactgatctctgaacagtgaataagctagctaatgctattgctgctccagcctcggagctgcacggctctggactctgtatagcactgaaactctgtataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatttagataatactgatctctgaacagtgaataagctagctagcttagcggttagcatctagctaatgctattgctgctcagcctcggagctgcacggctctggactctgtatagcactgaaactctctataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatccatacaaaaggcgcaccgtattataagacgcactgtcaatttttgtgaaaattaaaagtttttaagtgcgccttatagtccgaaaaatacggtagctA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14368 True 1281 lncRNA 0.41 1 14707333 14708613

Neighbor

gene id symbol gene type direction distance location
smg1 smg1,LOC107729485 coding downstream 243349 14404597 ~ 14463984 (-)
LOC111193432 NA coding downstream 263570 14442704 ~ 14443763 (-)
arl6ip1 arl6ip1,LOC107658451 coding downstream 308636 14384234 ~ 14398697 (-)
LOC103036770 tceb2,LOC103036770,LOC108427344,LOC107564001,LOC108280902,LOC105012960 coding downstream 335825 14361634 ~ 14371508 (-)
LOC103037078 LOC103037078,LOC108427313 coding downstream 347242 14354352 ~ 14360091 (-)
LOC103040137 setd1a,LOC107737760,LOC107729457,LOC107658500,LOC107689688,LOC107582993 coding upstream 4978 14713591 ~ 14765570 (-)
fus fus,LOC103040960,LOC107658502,LOC107689689,LOC107554122 coding upstream 65088 14773701 ~ 14786659 (-)
kat8 kat8,LOC107554120,LOC107689650 coding upstream 104447 14813060 ~ 14821943 (-)
rnf25 rnf25,LOC107689710,LOC107554089 coding upstream 113757 14822370 ~ 14828329 (-)
LOC103040755 si:dkey-16l2.16,LOC108427354,LOC107729502,LOC107658507,LOC108280555,LOC107554119 coding upstream 122648 14831261 ~ 14847859 (-)
G10595 NA non-coding downstream 12439 14692782 ~ 14694894 (-)
G10561 NA non-coding downstream 400803 14306272 ~ 14306530 (-)
G10430 NA non-coding downstream 685444 14021687 ~ 14021889 (-)
G10429 NA non-coding downstream 696920 14010176 ~ 14010413 (-)
G10413 NA non-coding downstream 789495 13917124 ~ 13917838 (-)
G10654 NA non-coding upstream 62717 14771330 ~ 14771618 (-)
G10782 polr3d non-coding upstream 310678 15019291 ~ 15020115 (-)
LOC111194139 NA non-coding upstream 379258 15087871 ~ 15089128 (-)
G10811 NA non-coding upstream 570840 15279453 ~ 15279928 (-)
G10962 NA non-coding upstream 960262 15668875 ~ 15689205 (-)
hsd3b7 hsd3b7,LOC106601563 other downstream 50772 14619376 ~ 14656561 (-)
G10560 NA other downstream 463539 14241061 ~ 14243794 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other downstream 624226 14038858 ~ 14083107 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 1414455 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 1890147 12813025 ~ 12817186 (-)
LOC103040656 LOC108427315 other upstream 79457 14788070 ~ 14797643 (-)
G10767 NA other upstream 214352 14922965 ~ 14923959 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other upstream 252219 14960832 ~ 14981569 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 564142 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 577063 15285676 ~ 15286735 (-)

Expression


Co-expression Network