LOC103040656 (LOC108427315)


Basic Information

Item Value
gene id LOC103040656
gene name LOC108427315
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 14788070 ~ 14797643 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14377
TTCAGCGGGGCCTCCAGACCTGTAGCATCACCGAGCAGCACAAAGCACAAGGAGTTCAAACTATGCCGGGCATTCTCCACCAGAGCCATATCTCTCAGCTATCAGCTCTATCAGGAGAAAAACGGGAAGAACtgctgaaaaacacagaaaagaaaCTCTAATGAGGAATTAAATCAGAGTTCTTGGCTGTTTTTGATCTTCTCTTGAGATGTTGCCTTCTGGGATGCAGATGCTCTTCTTTGGATTGGTTGCCACAGGTCTGTGGCTCATGCCGTCTTGTAAGGCACAAGTATGTGGAAGGCCTCCTCTGGGGAATCGAATTGTAGGAGGCACTGATGCTCGAGATGGAGCGTGGCCATGGCAGGTGGACATTCAGATGGGAACGAATGGTCACGTGTGTGGAGGATCCCTCATCTCCAGGGAATGGGTCCTGTCTGCTGCACACTGTTTTCCTAAGTAAGCTTCTCAACACTCgatgtaaaaataaaggttgtgTTGCACTGATTTTACAAAGGGTAGAACCCTCTCTTAAGAATGTGTAACTTTGAGTAGCCCAaacctcagtccacatg
>XM_022677002.1
AACGGGAAGAACtgctgaaaaacacagaaaagaaaCTCTAATGAGGAATTAAATCAGAGTTCTTGGCTGTTTTTGATCTTCTCTTGAGATGTTGCCTTCTGGGATGCAGATGCTCTTCTTTGGATTGGTTGCCACAGGTCTGTGGCTCATGCCGTCTTGTAAGGCACAAGGTAATTACAATACACCGCTTTTCTTTTCATCCTTTGTGTCGTTTTTTCTCTTTGATATCTATATCCATGTGTTCACCGCTGATCTCTTTTGTGTAGTATGTGGAAGGCCTCCTCTGGGGAATCGAATTGTAGGAGGCACTGATGCTCGAGATGGAGCGTGGCCATGGCAGGTGGACATTCAGATGGGAACGAATGGTCACGTGTGTGGAGGATCCCTCATCTCCAGGGAATGGGTCCTGTCTGCTGCACACTGTTTTCCTAAACCTTCAGACGTGTCCTCATATCATCTCTACATGGGTCGCTATCAGCTAAACGGAATTAACAAGTTTGAGGTGTCCAGCCAAGTGAAGAGTGTTGTGGTGCCAGATGGTTATTCCATGCCTCAAGCGGGCAGAGACGTGGCGCTGGTCCAGCTGAGCACGCCGGTTTCTTGGACAGACAGAATCCAGCCGGTGTGTCTGCCTGACTCTGAGCTACAGTTCAACGGAGGGACTCAGTGCTACGTCACGGGCTGGGGGGACGTACAGGAAGGGGTCCCTCTCTCTGGTGTTGGAACGCTACGGGAAGTTGGAGTGCCCATAATTGACCAAGCTTCGTGCAACACCATGTACGCGATCCAGTCATCCAACTCAGAGAAAGTGGAAATTCTCTCAGATATGATCTGTGCTGGATACCAAGAAGGAGGCAAAGACTCATGCCAGGGCGACTCTGGAGGACCCCTTGTTTGTCCCGTGGGCAATGGGACGTGGATTCAGGCAGGGATTGTGAGTTTCGGACTGGGATGCGCTCAACAGAACAGACCTGGAGTTTACGCCAAAGTGTCCAGTTTTGCTAAACTGATCCGCTCCACGGTGCCTGAAGCCCAGTTGTTGGGACAAGCGTGGATTTGTGGTGCTGAAAACCTTCTGGTGCTGAGTCTAAGTGTAGCATCAGTGCTACTGGGGACACACTGGACATGTTAACAGGAAGTGTGTAGTTTTGTGTCAAAAGACAGTAGGAAATGGAAGATCCCCCAAGACACAAaaagatgttttaaataaataattattaacaatGGGTTAGtattatatgtaataaatgGACAATTTCTGGAAATTGGAAATACTGGATTGATCACTTTTACCAGAGGAGAAACTATGCCTTTGAATGCTAATCCAGCCAATACTGAACTACAGTATGTAAATGTTCTACATCAGCTAAACACTGGTCTTTTCTTTctgagccatttctcatgtgCTATGATAAAGGTGACTACAAGTTATTGCTAATCAATGCAAATGTTCCTAATTGATTTTAGTAACGGCTGTTTGGGCAGATTAGTTTCCAAATGGGACAGTaaagatatgtttttatactacactacattcttcgatttacaaaaaaaagttaagcaaAGCTAATTTAATGATGCATGATTGTCTGATGGGTCAATGATAAttgattttaatattgtatGTTTATAAAGCagatgttgattgattaatgtttcatttattgccatatacactacattttaaatgttttgtttcttttcataCAAGGAATCAGTTACCATAACCAAAATAccttaaattgtatttttataattttaatttttatctttGAAGTAAGTGAAATAACGATGTGACTGAACTTTACTGTTTCCTATACTATACTGTTACTATTCTGTTGAGCATTTGTTGTGGGCATTGCTATCCATAAGGTTCCAATAAGTTCaatgcttttaatttttttttaacttcttaAAAGTCTATACAATGTTGAATTAGGTTTTTAAGCTGTGCAGTGTTTATGAAGGACCTGTGTCCTGAAGCAGGATAATGTACATTTGATGAATGAATACATCTGATGAAGGAATCAAATACATTACATTCTTAAGTGTT
>XM_022677011.1
CTCCACCAGAGCCATATCTCTCAGCTATCAGCTCTATCAGGAGAAAAACGGGAAGAACtgctgaaaaacacagaaaagaaaCTCTAATGAGGAATTAAATCAGAGTTCTTGGCTGTTTTTGATCTTCTCTTGAGATGTTGCCTTCTGGGATGCAGATGCTCTTCTTTGGATTGGTTGCCACAGGTCTGTGGCTCATGCCGTCTTGTAAGGCACAAGTATGTGGAAGGCCTCCTCTGGGGAATCGAATTGTAGGAGGCACTGATGCTCGAGATGGAGCGTGGCCATGGCAGGTGGACATTCAGATGGGAACGAATGGTCACGTGTGTGGAGGATCCCTCATCTCCAGGGAATGGGTCCTGTCTGCTGCACACTGTTTTCCTAAACCTTCAGACGTGTCCTCATATCATCTCTACATGGGTCGCTATCAGCTAAACGGAATTAACAAGTTTGAGGTGTCCAGCCAAGTGAAGAGTGTTGTGGTGCCAGATGGTTATTCCATGCCTCAAGCGGGCAGAGACGTGGCGCTGGTCCAGCTGAGCACGCCGGTTTCTTGGACAGACAGAATCCAGCCGGTGTGTCTGCCTGACTCTGAGCTACAGTTCAACGGAGGGACTCAGTGCTACGTCACGGGCTGGGGGGACGTACAGGAAGGGGTCCCTCTCTCTGGTGTTGGAACGCTACGGGAAGTTGGAGTGCCCATAATTGACCAAGCTTCGTGCAACACCATGTACGCGATCCAGTCATCCAACTCAGAGAAAGTGGAAATTCTCTCAGATATGATCTGTGCTGGATACCAAGAAGGAGGCAAAGACTCATGCCAGGGCGACTCTGGAGGACCCCTTGTTTGTCCCGTGGGCAATGGGACGTGGATTCAGGCAGGGATTGTGAGTTTCGGACTGGGATGCGCTCAACAGAACAGACCTGGAGTTTACGCCAAAGTGTCCAGTTTTGCTAAACTGATCCGCTCCACGGTGCCTGAAGCCCAGTTGTTGGGACAAGCGTGGATTTGTGGTGCTGAAAACCTTCTGGTGCTGAGTCTAAGTGTAGCATCAGTGCTACTGGGGACACACTGGACATGTTAACAGGAAGTGTGTAGTTTTGTGTCAAAAGACAGTAGGAAATGGAAGATCCCCCAAGACACAAaaagatgttttaaataaataattattaacaatGGGTTAGtattatatgtaataaatgGACAATTTCTGGAAATTGGAAATACTGGATTGATCACTTTTACCAGAGGAGAAACTATGCCTTTGAATGCTAATCCAGCCAATACTGAACTACAGTATGTAAATGTTCTACATCAGCTAAACACTGGTCTTTTCTTTctgagccatttctcatgtgCTATGATAAAGGTGACTACAAGTTATTGCTAATCAATGCAAATGTTCCTAATTGATTTTAGTAACGGCTGTTTGGGCAGATTAGTTTCCAAATGGGACAGTaaagatatgtttttatactacactacattcttcgatttacaaaaaaaagttaagcaaAGCTAATTTAATGATGCATGATTGTCTGATGGGTCAATGATAAttgattttaatattgtatGTTTATAAAGCagatgttgattgattaatgtttcatttattgccatatacactacattttaaatgttttgtttcttttcataCAAGGAATCAGTTACCATAACCAAAATAccttaaattgtatttttataattttaatttttatctttGAAGTAAGTGAAATAACGATGTGACTGAACTTTACTGTTTCCTATACTATACTGTTACTATTCTGTTGAGCATTTGTTGTGGGCATTGCTATCCATAAGGTTCCAATAAGTTCaatgcttttaatttttttttaacttcttaAAAGTCTATACAATGTTGAATTAGGTTTTTAAGCTGTGCAGTGTTTATGAAGGACCTGTGTCCTGAAGCAGGATAATGTACATTTGATGAATGAATACATCTGATGAAGGAATCAAATACATTACATTCTTAAGTGTT

Function

NR:

description
PREDICTED: serine protease 33-like isoform X1

GO: NA

KEGG:

id description
K09628 PRSS27; serine protease 27

RNA

RNA id representative length rna type GC content exon number start site end site
TU14377 False 572 lncRNA 0.46 4 14794671 14797643
XM_022677002.1 True 2053 mRNA 0.41 6 14788070 14797523
XM_022677011.1 False 2003 mRNA 0.42 7 14788070 14797569

Neighbor

gene id symbol gene type direction distance location
fus fus,LOC103040960,LOC107658502,LOC107689689,LOC107554122 coding downstream 1411 14773701 ~ 14786659 (-)
LOC103040137 setd1a,LOC107737760,LOC107729457,LOC107658500,LOC107689688,LOC107582993 coding downstream 22500 14713591 ~ 14765570 (-)
smg1 smg1,LOC107729485 coding downstream 324086 14404597 ~ 14463984 (-)
LOC111193432 NA coding downstream 344307 14442704 ~ 14443763 (-)
arl6ip1 arl6ip1,LOC107658451 coding downstream 389373 14384234 ~ 14398697 (-)
kat8 kat8,LOC107554120,LOC107689650 coding upstream 15417 14813060 ~ 14821943 (-)
rnf25 rnf25,LOC107689710,LOC107554089 coding upstream 24727 14822370 ~ 14828329 (-)
LOC103040755 si:dkey-16l2.16,LOC108427354,LOC107729502,LOC107658507,LOC108280555,LOC107554119 coding upstream 33618 14831261 ~ 14847859 (-)
thoc6 thoc6,LOC107729483,LOC108280484,LOC107689651,LOC107730738,LOC107583000 coding upstream 52473 14850116 ~ 14863677 (-)
LOC103042079 LOC108427355,LOC108280305,LOC107729482,LOC107583001,LOC107689653,LOC107730748 coding upstream 70731 14868374 ~ 14885393 (-)
G10654 NA non-coding downstream 16452 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 79457 14707333 ~ 14708613 (-)
G10595 NA non-coding downstream 93176 14692782 ~ 14694894 (-)
G10561 NA non-coding downstream 481540 14306272 ~ 14306530 (-)
G10430 NA non-coding downstream 766181 14021687 ~ 14021889 (-)
G10782 polr3d non-coding upstream 221648 15019291 ~ 15020115 (-)
LOC111194139 NA non-coding upstream 290228 15087871 ~ 15089128 (-)
G10811 NA non-coding upstream 481810 15279453 ~ 15279928 (-)
G10962 NA non-coding upstream 871232 15668875 ~ 15689205 (-)
G10989 NA non-coding upstream 1092430 15890073 ~ 15890647 (-)
hsd3b7 hsd3b7,LOC106601563 other downstream 131509 14619376 ~ 14656561 (-)
G10560 NA other downstream 544276 14241061 ~ 14243794 (-)
LOC103034594 ppp1caa,LOC103034594,LOC105897688,LOC108280818,LOC103367324,LOC101477563,LOC105894037 other downstream 704963 14038858 ~ 14083107 (-)
LOC103034410 lrrc4b,lrrc4ba,LOC103034410,LOC107680881,LOC107551155,LOC107667844,LOC107563987,LOC107732840 other downstream 1495192 13149357 ~ 13292878 (-)
G10089 akt1s1,LOC107564011,LOC107680841 other downstream 1970884 12813025 ~ 12817186 (-)
G10767 NA other upstream 125322 14922965 ~ 14923959 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other upstream 163189 14960832 ~ 14981569 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 475112 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 488033 15285676 ~ 15286735 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 961113 15758756 ~ 15902433 (-)

Expression


Co-expression Network