G10782 (polr3d)


Basic Information

Item Value
gene id G10782
gene name polr3d
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15019291 ~ 15020115 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14554
aataataataataatttatgtattAAACTTGCTAAAGAAGCGTATACCTAGGGTTTGACAGGTTCTTGTCCCAGTTGAGACGGTCTAAAAGCTCTCCACACatgaataaatatttctttctttcttacctCTATATAAATGGTCTATGAATAGTATGTGATGGTGTTTTTcgaatagtgtgtgtgatggtggtgACTGAAAAAGACCTGAAGGAAAGAGCAGGAGGTCCCCAGAGCCACATCCAGCGTAACATTCCCCAAGATGAGCTGCACTCTGCCCGATTTCCTCACCAGCATCTTGCCCACCAAACCCTCCTGCAGGTGCTTCAGGTTGCAGACATTCTCCTCCTCagtctcctcctgctgctcctggtctTCAGTTTTTTGCAACATGGACTGCCCGTCCTCCGACTGCACAGCTGTTTTTGTTGGTCTGACATCACTGGTAGGCGGTTGACCTGGCAGTGAATCAGGCAGTTGCATAAAAAGCAGCTCCTCCTCTTTGCACTGACTCCATGTTTCAAGCAGGTCGGGCAGCGAATCAGGCTCAGATATGACGGGTGGCTTTAACATGGGTTCTGGCTTCTTCATCTCAGGGACGTCAAGAGGTTCTTGTTTAACTG

Function

symbol description
polr3d Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3D (RNA polymerase III subunit D).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14554 True 622 lncRNA 0.49 2 15019291 15020115

Neighbor

gene id symbol gene type direction distance location
nosip nosip,LOC107658495,LOC107729514 coding downstream 5524 15004815 ~ 15013767 (-)
bcl2l12 bcl2l12 coding downstream 69234 14937585 ~ 14950057 (-)
LOC103041773 LOC103041773,LOC108427309,LOC108280499,LOC107689658,LOC107658437,LOC107583101,LOC107729484 coding downstream 115859 14898083 ~ 14903432 (-)
LOC103041360 NA coding downstream 123583 14886570 ~ 14895708 (-)
LOC103042079 LOC108427355,LOC108280305,LOC107729482,LOC107583001,LOC107689653,LOC107730748 coding downstream 133898 14868374 ~ 14885393 (-)
LOC103044148 LOC108280579,LOC108427364,LOC100007086 coding upstream 9071 15029186 ~ 15039057 (-)
LOC103041664 LOC108427365 coding upstream 26352 15046467 ~ 15087213 (-)
scaf1 scaf1,LOC107658492,LOC107583012,LOC106583916 coding upstream 78924 15099039 ~ 15112654 (-)
LOC103041971 LOC103041971 coding upstream 93354 15113469 ~ 15115471 (-)
prr12 prr12,prr12b,LOC107729421,LOC107658420,LOC107689691,LOC107730729,LOC107554076 coding upstream 116429 15136544 ~ 15172432 (-)
G10654 NA non-coding downstream 247673 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 310678 14707333 ~ 14708613 (-)
G10595 NA non-coding downstream 324397 14692782 ~ 14694894 (-)
G10561 NA non-coding downstream 712761 14306272 ~ 14306530 (-)
G10430 NA non-coding downstream 997402 14021687 ~ 14021889 (-)
LOC111194139 NA non-coding upstream 67756 15087871 ~ 15089128 (-)
G10811 NA non-coding upstream 259338 15279453 ~ 15279928 (-)
G10962 NA non-coding upstream 648760 15668875 ~ 15689205 (-)
G10989 NA non-coding upstream 869958 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 923242 15943357 ~ 15943893 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 37722 14960832 ~ 14981569 (-)
G10767 NA other downstream 95332 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 221648 14788070 ~ 14797643 (-)
hsd3b7 hsd3b7,LOC106601563 other downstream 362730 14619376 ~ 14656561 (-)
G10560 NA other downstream 775497 14241061 ~ 14243794 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 252640 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 265561 15285676 ~ 15286735 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 738641 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 959122 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 1301463 16321578 ~ 16353834 (-)

Expression


Co-expression Network