LOC111194139


Basic Information

Item Value
gene id LOC111194139
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15087871 ~ 15089128 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14578
TCCTCATAAATGTGTGCCAGGACCAGGAAGGACTCTGAGATAGAAGGTGGGAATGCTGTCCAAATAAACAGAGGGATGGAAAGACAGATATACAAAGACAGAGTTACAAAGATGAAAACAGATTGAATAAGATTGAAGAACTTTTAGaTTGGTGTGAATGTTACAGATCAGATGACTGAAGAGGGGCATCCATAGATTGACATAGATAGATTGGTACCTCCTTtttctacggtggccgagaaagcccaacgcagtgcaaattgaaaagcgctgcaaaagcacaaaacacatccatcaaaattacaacacaggcgcagcaaatagaaaaacgcgctgcaaatagaaaaatgcgctgcaaatacaaccacaacacaacggaacgcttttcaatttgcactgcgttgggctttctcggccaccgtatttTTCCTACTGATCCTCCTCCATGACCCGGACACCATCTTGCTGCCTAAGGAGGAAACAAAAGAAGCATCTTAAAACCCTCCCTAATGCTGCTTCTGGCGGAGAATACACCACAGAATCCTACCCaggaaatattttaaagattctgGAGTGACCTCACTGCCGCCCACAAAGCACCTgcgcacacttttttttttttaattaaatatatttatttttttatttttttattgtgtatattttgAAATAATGCAACTTGATTAAACACGTATATGGCTGTAGAACTGTCCACTCATTatgtacagataaaaaaaaagttttaaataaaatgaaataaaataaataa
>XR_002650946.1
gaaaaatgcgctgcaaatacaaccacaacacaacggaacgcttttcaatttgcactgcgttgggctttctcggccaccgtatttTTCCTACTGATCCTCCTCCATGACCCGGACACCATCTTGCTGCCTAAGGAGGAAACAAAAGAAGCATCTTAAAACCCTCCCTAATGCTGCTTCTGGCGGAGAATACACCACAGAATCCTACCCaggaaatattttaaagattctgGAGTGACCTCACTGCCGCCCACAAAGCACCTgcgcacacttttttttttttaattaaatatatttatttttttatttttttattgtgtatattttgAAATAATGCAACTTGATTAAACACGTATATGGCTGTAGAACTGTCCACTCATTatgtacagataaaaaaaaagttttaaataaaatgaaataaaataaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14578 True 769 lncRNA 0.39 3 15087871 15089128
XR_002650946.1 False 427 lncRNA 0.37 2 15087871 15088680

Neighbor

gene id symbol gene type direction distance location
LOC103041664 LOC108427365 coding downstream 658 15046467 ~ 15087213 (-)
LOC103044148 LOC108280579,LOC108427364,LOC100007086 coding downstream 48814 15029186 ~ 15039057 (-)
nosip nosip,LOC107658495,LOC107729514 coding downstream 74104 15004815 ~ 15013767 (-)
bcl2l12 bcl2l12 coding downstream 137814 14937585 ~ 14950057 (-)
LOC103041773 LOC103041773,LOC108427309,LOC108280499,LOC107689658,LOC107658437,LOC107583101,LOC107729484 coding downstream 184439 14898083 ~ 14903432 (-)
scaf1 scaf1,LOC107658492,LOC107583012,LOC106583916 coding upstream 9911 15099039 ~ 15112654 (-)
LOC103041971 LOC103041971 coding upstream 24341 15113469 ~ 15115471 (-)
prr12 prr12,prr12b,LOC107729421,LOC107658420,LOC107689691,LOC107730729,LOC107554076 coding upstream 47416 15136544 ~ 15172432 (-)
prrg2 NA coding upstream 85269 15174397 ~ 15182700 (-)
rras rras,LOC107730736,LOC107658490,LOC107583016,LOC107554112 coding upstream 105735 15194863 ~ 15208007 (-)
G10782 polr3d non-coding downstream 67756 15019291 ~ 15020115 (-)
G10654 NA non-coding downstream 316253 14771330 ~ 14771618 (-)
G10649 NA non-coding downstream 379258 14707333 ~ 14708613 (-)
G10595 NA non-coding downstream 392977 14692782 ~ 14694894 (-)
G10561 NA non-coding downstream 781341 14306272 ~ 14306530 (-)
G10811 NA non-coding upstream 190325 15279453 ~ 15279928 (-)
G10962 NA non-coding upstream 579747 15668875 ~ 15689205 (-)
G10989 NA non-coding upstream 800945 15890073 ~ 15890647 (-)
G10996 NA non-coding upstream 854229 15943357 ~ 15943893 (-)
G11000 NA non-coding upstream 861806 15950934 ~ 15951171 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 106302 14960832 ~ 14981569 (-)
G10767 NA other downstream 163912 14922965 ~ 14923959 (-)
LOC103040656 LOC108427315 other downstream 290228 14788070 ~ 14797643 (-)
hsd3b7 hsd3b7,LOC106601563 other downstream 431310 14619376 ~ 14656561 (-)
G10560 NA other downstream 844077 14241061 ~ 14243794 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other upstream 183627 15272755 ~ 15278437 (-)
LOC111188178 NA other upstream 196548 15285676 ~ 15286735 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other upstream 669628 15758756 ~ 15902433 (-)
strada strada,LOC107693497,LOC107658471 other upstream 890109 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 1232450 16321578 ~ 16353834 (-)

Expression


Co-expression Network