G10996


Basic Information

Item Value
gene id G10996
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15943357 ~ 15943893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14858
ttatcaaactttaatatcagacaaagataacctgaataaatatataaaacactttttaaatcataattttatttattaaagaaaaaactataCAAACCTATCTAgatctgtgtgaaaaagtgttttggtccactcttctttacagaatagttttaattcagacacattggaggcgTTTCCAGCATAAACAGATCAGCCACAGCATCTcgatcagacttttttttttaaaccatttagaggtggacttgtttgtgtgctttggatcactGTCCTGCcacagaacccaagtacacctgagcttgaggtcacaaacagatggtcagatattctccttcaggattgtctggtaaacagcagaattcctggttccatctattacagcaagttatccaaaacctgaagcagcaaagcagccttAGAACATCACACtaacaccaccatgttttacattcagtatgatgttctttttctgaaattatattttatttttaaacacgaAGTAATGTGAcaaacaccttccaaaaagttccacttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14858 True 537 lncRNA 0.34 1 15943357 15943893

Neighbor

gene id symbol gene type direction distance location
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding downstream 813 15936522 ~ 15942544 (-)
LOC103031937 NA coding downstream 14664 15910391 ~ 15928693 (-)
aldh16a1 aldh16a1 coding downstream 204544 15722985 ~ 15738813 (-)
LOC103038450 LOC108427385,LOC100528069,LOC108427383,LOC108427382 coding downstream 229917 15711815 ~ 15713440 (-)
LOC103044149 LOC108427384,LOC108427383,LOC100528069,LOC108427382 coding downstream 237550 15700494 ~ 15705807 (-)
snrnp70 snrnp70,LOC106583923 coding upstream 8951 15952844 ~ 15964476 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding upstream 331784 16275677 ~ 16285893 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding upstream 462058 16405951 ~ 16408493 (-)
ccdc43 ccdc43 coding upstream 484211 16428104 ~ 16437125 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding upstream 749529 16693422 ~ 16763105 (-)
G10989 NA non-coding downstream 52710 15890073 ~ 15890647 (-)
G10962 NA non-coding downstream 254152 15668875 ~ 15689205 (-)
G10811 NA non-coding downstream 663429 15279453 ~ 15279928 (-)
LOC111194139 NA non-coding downstream 854229 15087871 ~ 15089128 (-)
G10782 polr3d non-coding downstream 923242 15019291 ~ 15020115 (-)
G11000 NA non-coding upstream 7041 15950934 ~ 15951171 (-)
G11008 NA non-coding upstream 63042 16006935 ~ 16007794 (-)
G11013 NA non-coding upstream 75735 16019628 ~ 16020852 (-)
G11014 LOC107693495,LOC107548322,LOC107730759,LOC107729497,LOC107583038,LOC107658468 non-coding upstream 77398 16021291 ~ 16024891 (-)
G11016 limd2,LOC107721965,LOC107674139,LOC107658411 non-coding upstream 102354 16046247 ~ 16081823 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 40924 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 656622 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 664920 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 961788 14960832 ~ 14981569 (-)
G10767 NA other downstream 1019398 14922965 ~ 14923959 (-)
strada strada,LOC107693497,LOC107658471 other upstream 35344 15979237 ~ 16004719 (-)
LOC103036671 LOC108427400 other upstream 377685 16321578 ~ 16353834 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 3164820 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 3297863 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 3842088 19785981 ~ 19802323 (-)

Expression


Co-expression Network