G11016 (limd2,LOC107721965,LOC107674139,LOC107658411)


Basic Information

Item Value
gene id G11016
gene name limd2,LOC107721965,LOC107674139,LOC107658411
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16046247 ~ 16081823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU14889
GGGagttcaaactttaaaaagcaAATGGGCAAACTTTAAATTTGATATTCAGGTGAAAACAGtcctttacaaataaaataaaaataaaaatcagggcAGACTGAAACATATGAAAGGAAGAAccccaaaaatataaaaatgctcaTTAAACTGATAATGGACAGCAAAAATCAAGTGCTACTGTGAAACTGATATGATTTAATTCGTATTCAGAGTccaaaatgcttttaaaattaaaaagttaaaaagtttggggggggggggggggaacatggagaaatacagtatagaaagacaaaaagaaaaaaaaaagagagagagagatggagagagtgtgtgaataTTGTTGTGAAGCATATTCCGGAGAGATATTTACAGTACCATGTACCCTGTACTTTCACagatataatattctatttcaAGCCAGGCCCAATggttcttatttaaaaaaaatctggaattcGATCATTCAGATCGTAAAAGactgacgaaaaaaaaaaaaatctcacacacatacacacacgatCCCCCGAACCTCTACCTGAGTGTACGGTCTAAAACACTGCATTCATTCATGCATTTTGTTTCACTGAAGGAGCTCTTTTttcactcgcacacacacatacacactctcctACAGACACACCTACCTACACCTACTAGTAAATAACTAGTAGTTGTGCTAAATAAAGtacacaaaaaaactattacattaaaataaaaatatgataaaaataacagaaataatcTCCCCAATCTAGACGGGGTGAATTTTGGTCACAAACAGCTAGTCAATCAAGagacataaaacaaagaaagaacataaaaaaataaaaacattttctaaagctaaataaaatcGAAGtgacaaaaatgagaaataaaaataggaaggaaaaaaaaaaaaaaagccacactCCAGAGGAAAAGACGCCTGCCCCGTTATGTTTGTGCACAAGTGTGTGTAAGTACTGGAAATGAGAGTATGGGTGAGAGTATGGGTGAGAGTATGGGTGAGAGTATGGGTGAGAAAGGGCAGGCAGGTCATCGTACATAAGTGGTTCGGACATACGGGCAATACACTAACAGTGCTAACACGGCGGGTGGACGTTAGGCCGTTTTGGTGATGCTCTCGGCGTCTTTGGAAGCCCACAGCTCTTTGTGCTGCTTGCGCCCGAAGCCCTCGTCATAGTTCCCTTTACTCTTGAAGAGTTGCTGGTAGTGAGGCTTGCAGTAGAACTCGCCCTGGAGGGCAGCGTAGGTGCCCAggcTGAGTTTGGCATTGCAGTGCTTGCAGCAGAAGCAGACTGTATGGAAAATAAGATTGTTGGCCACCAGTCTCTCCATCGGATACACTGTCTTCTGACAGGCTGCACAGGTCTCACTCGGAGTCTTGAAACTGAATGACTTGGAGCGCTGAACAGGCTTTTCTTCTGAGGCGTTTCTGTTGTCCATCTGTGTATGTGTACCGCTCTTTTACCGCTGCAATAAAACCAGAACAGACAAAGCGCTGCAGTTCAGCTGCTGCTAAGCTTCTTCCTTTTGCACCTCTATGCAGCCGCTTTCAGCGCTCAGTTAAAACCGACGAGCCGCTCGCTAATGATGTTGAGTTTTTTTCCAGTCTCTTTTATTCAGCCGGG

Function

symbol description
limd2 Predicted to enable metal ion binding activity. Orthologous to human LIMD2 (LIM domain containing 2).

NR:

description
LIM domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14889 True 1640 lncRNA 0.41 5 16046247 16081823

Neighbor

gene id symbol gene type direction distance location
snrnp70 snrnp70,LOC106583923 coding downstream 81771 15952844 ~ 15964476 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding downstream 103703 15936522 ~ 15942544 (-)
LOC103031937 NA coding downstream 117554 15910391 ~ 15928693 (-)
aldh16a1 aldh16a1 coding downstream 307434 15722985 ~ 15738813 (-)
LOC103038450 LOC108427385,LOC100528069,LOC108427383,LOC108427382 coding downstream 332807 15711815 ~ 15713440 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding upstream 193854 16275677 ~ 16285893 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding upstream 324128 16405951 ~ 16408493 (-)
ccdc43 ccdc43 coding upstream 346281 16428104 ~ 16437125 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding upstream 611599 16693422 ~ 16763105 (-)
LOC111194193 NA coding upstream 984573 17066396 ~ 17068055 (-)
G11014 LOC107693495,LOC107548322,LOC107730759,LOC107729497,LOC107583038,LOC107658468 non-coding downstream 21356 16021291 ~ 16024891 (-)
G11013 NA non-coding downstream 25395 16019628 ~ 16020852 (-)
G11008 NA non-coding downstream 38453 16006935 ~ 16007794 (-)
G11000 NA non-coding downstream 95076 15950934 ~ 15951171 (-)
G10996 NA non-coding downstream 102354 15943357 ~ 15943893 (-)
G11018 NA non-coding upstream 2333 16084156 ~ 16085257 (-)
G11017 NA non-coding upstream 3795 16085618 ~ 16086733 (-)
G11043 NA non-coding upstream 63218 16145041 ~ 16145300 (-)
G11036 NA non-coding upstream 87982 16169805 ~ 16224688 (-)
G11065 NA non-coding upstream 188777 16270600 ~ 16272149 (-)
strada strada,LOC107693497,LOC107658471 other downstream 41528 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 143814 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 759512 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 767810 15272755 ~ 15278437 (-)
LOC103043825 pax10,LOC108427317,LOC107689663,LOC108280587,LOC107557340,LOC107579793 other downstream 1064678 14960832 ~ 14981569 (-)
LOC103036671 LOC108427400 other upstream 239755 16321578 ~ 16353834 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 3026890 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 3159933 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 3704158 19785981 ~ 19802323 (-)
G11917 NA other upstream 3916617 19998440 ~ 20082442 (-)

Expression


Co-expression Network