G11134


Basic Information

Item Value
gene id G11134
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16686329 ~ 16687516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15044
GGAGAAATCTgctgtaaaatggacttggggtgcagtgaaacatgataacgagcaTAACATTGCCTGTGCAAAGAAttagctatttttacaccattaacaagcttaaaGTTCGGAGaaccctgatatttaaaatgaagcactgagaaatttaaaagtgcacagataggtaaataaatatatatttatccatctatatatataataaataataataataataaataaaaagttgaaatgcatgaatattatagatattttttaGCAACAGATAAAATTCATGCATCTGTTTGGCAATTTCAAGATGGCAGCCTGCCAGGAtcatcagctaaaagtgctgtatttaggAATGCTAGGAGCGAACAAAAGTGAGGTtttcgagaaaaaaaaaaaagttgggctcattatcatgtttctctacaccccaagtccatttcacaccagatttttcCTTTAATCTTCCATGTTAGAGAAGCTcactcattattattattattattattattattattattattattttttttttttttttttttttaattttgcctATTGTTTCAATGCTGCTGGAGATCCACTGAGCCTTCACAGAAGTGTGTCCACACCTCTAGCCTTCTCTTGACCACTGACAACAGTGCAGAGAGAAAGCAGTGGGCCAGagcgaaaaagagagagagagagagaaaagagagagaaagagagaacgagagagagagatagagagacacagacaaatAGCCTATGGTCAAGCTTTTCCTGTGGCTTCCCCTCAGTGGTCACctccacacactcactaactaCTGCAACAATGTGAAGAGCTGACACTGACGTGATACGACAGGGTGACAGCATGCAGGCGAATGAAGTTTATCTGTTCAaattgtgtatgagtgtgtgggagtgtgtgtttgtgtgtgtgtgtgtatgtgcgtccATGCAAACACATGTACTGTAATTCCTCCCTGCCACATTATATCCGTTCCATAAATATAGCCACTAAAACTTCAGCCAATAGAAGAGGCTCTAATCAGCCAGATGGGAGGACGGGAAGAGATGTGCAGCCGTTTCAGAGAAGACGCGAGAACAATAAAGCTGTAAAAATCGTAAAAAAGGTAAATCTATGCTTATGTTTGTCAGTCCTGATTTATCTTTtggaaatgttaaataa

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15044 True 1165 lncRNA 0.37 2 16686329 16687516

Neighbor

gene id symbol gene type direction distance location
ccdc43 ccdc43 coding downstream 249204 16428104 ~ 16437125 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding downstream 277836 16405951 ~ 16408493 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 400436 16275677 ~ 16285893 (-)
snrnp70 snrnp70,LOC106583923 coding downstream 721853 15952844 ~ 15964476 (-)
LOC103032263 lin7b,LOC107693502,LOC107730776,LOC107658474,LOC107548331 coding downstream 743785 15936522 ~ 15942544 (-)
c1ql1 c1ql1,LOC107729572,LOC103393155 coding upstream 5906 16693422 ~ 16763105 (-)
LOC111194193 NA coding upstream 378880 17066396 ~ 17068055 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding upstream 549858 17237374 ~ 17512950 (-)
LOC111194274 NA coding upstream 1407523 18095039 ~ 18096516 (-)
LOC111194212 NA coding upstream 1538588 18226104 ~ 18229347 (-)
G11125 NA non-coding downstream 29711 16656399 ~ 16656618 (-)
G11116 NA non-coding downstream 68290 16605038 ~ 16618039 (-)
G11108 NA non-coding downstream 124966 16561124 ~ 16561363 (-)
G11102 NA non-coding downstream 195225 16490768 ~ 16491104 (-)
G11100 NA non-coding downstream 196103 16490025 ~ 16490226 (-)
G11137 NA non-coding upstream 71900 16759416 ~ 16760021 (-)
G11150 NA non-coding upstream 129721 16817237 ~ 16817754 (-)
G11152 NA non-coding upstream 145725 16833241 ~ 16840238 (-)
G11153 NA non-coding upstream 146726 16834242 ~ 16839958 (-)
G11155 NA non-coding upstream 155202 16842718 ~ 16843004 (-)
LOC103036671 LOC108427400 other downstream 332495 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 681610 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 783896 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 1399594 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 1407892 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 2421197 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 2554240 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 3098465 19785981 ~ 19802323 (-)
G11917 NA other upstream 3310924 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 4287566 20975082 ~ 20975154 (-)

Expression


Co-expression Network