G11153


Basic Information

Item Value
gene id G11153
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16834242 ~ 16839958 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU15071
tagcaaccgcctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaacaccttagcaacaccttagcaacaccttagcaacaccctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaacaccttagca
>TU15072
caaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaaccacctagcaaccacctagcaacaccttagcaaccaccccggataccatagca
>TU15073
cctagcaacaccttagcaacaccttagcaacaccttagcaacaccttagcaacaccttagcaacaccctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccccctagcaaccacctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccctagcaacaccttagcaaccaccccggataccatagcaacaccttagcaaccgcctagcaacaccttagcaaccaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15071 False 233 lncRNA 0.51 2 16838732 16839958
TU15072 False 229 lncRNA 0.54 2 16834242 16837863
TU15073 True 351 lncRNA 0.49 3 16837617 16838934

Neighbor

gene id symbol gene type direction distance location
c1ql1 c1ql1,LOC107729572,LOC103393155 coding downstream 71137 16693422 ~ 16763105 (-)
ccdc43 ccdc43 coding downstream 397117 16428104 ~ 16437125 (-)
fzd2 fzd2,LOC107583044,LOC107729561,LOC107658461,LOC107721960,LOC107564008 coding downstream 425749 16405951 ~ 16408493 (-)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 548349 16275677 ~ 16285893 (-)
snrnp70 snrnp70,LOC106583923 coding downstream 869766 15952844 ~ 15964476 (-)
LOC111194193 NA coding upstream 226438 17066396 ~ 17068055 (-)
LOC103042512 zgc:172282,LOC108433964,LOC107697541,LOC107758157,LOC107749639,LOC107678250,LOC107555640 coding upstream 397416 17237374 ~ 17512950 (-)
LOC111194274 NA coding upstream 1255081 18095039 ~ 18096516 (-)
LOC111194212 NA coding upstream 1386146 18226104 ~ 18229347 (-)
mos mos coding upstream 1397354 18237312 ~ 18238566 (-)
G11150 NA non-coding downstream 16488 16817237 ~ 16817754 (-)
G11137 NA non-coding downstream 74221 16759416 ~ 16760021 (-)
G11134 NA non-coding downstream 146726 16686329 ~ 16687516 (-)
G11125 NA non-coding downstream 177624 16656399 ~ 16656618 (-)
G11116 NA non-coding downstream 216203 16605038 ~ 16618039 (-)
G11155 NA non-coding upstream 2760 16842718 ~ 16843004 (-)
G11157 NA non-coding upstream 24370 16864328 ~ 16864782 (-)
G11162 NA non-coding upstream 49089 16889047 ~ 16889498 (-)
G11179 NA non-coding upstream 212678 17052636 ~ 17053640 (-)
G11238 NA non-coding upstream 452704 17292662 ~ 17298585 (-)
LOC103036671 LOC108427400 other downstream 480408 16321578 ~ 16353834 (-)
strada strada,LOC107693497,LOC107658471 other downstream 829523 15979237 ~ 16004719 (-)
LOC103030038 kcnc3a,LOC108427388,LOC107729449,LOC107693499,LOC107548332 other downstream 931809 15758756 ~ 15902433 (-)
LOC111188178 NA other downstream 1547507 15285676 ~ 15286735 (-)
G10808 prmt1,LOC107729532,LOC107658485,LOC107689671 other downstream 1555805 15272755 ~ 15278437 (-)
G11719 med13,LOC108435287,LOC107586266,LOC107726096,LOC107597541 other upstream 2268755 19108713 ~ 19111572 (-)
LOC103042450 dyrk1a,LOC107662773,LOC107586271,LOC107726100,LOC108435291,LOC107597536,LOC107729114 other upstream 2401798 19241756 ~ 19273854 (-)
jam3 jam3,jam3a,LOC107699899,LOC107597526,LOC107662760,LOC107713445 other upstream 2946023 19785981 ~ 19802323 (-)
G11917 NA other upstream 3158482 19998440 ~ 20082442 (-)
trnak-cuu NA other upstream 4135124 20975082 ~ 20975154 (-)

Expression


Co-expression Network